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[Feature:Autograding] Adds autograding example for database query gradeables (#26)
* added example database assignment * fixed gradeable structure * fixed gradeable structure * makes requested changes * update config
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‎examples/18_postgres_database/config/config.json

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{
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"resource_limits": {
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"RLIMIT_CPU": 180
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},
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"autograding_method": "docker",
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"container_options": {
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"use_router": false
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},
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"autograding": {
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"submission_to_runner": ["**/*.py", "**/*.txt","**/*.sql"],
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"work_to_details": ["**/*.txt"]
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},
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"testcases": [
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{
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"title": "Queries",
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"points": 15,
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"validation": [
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{
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"method": "diff",
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"description": "One",
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"deduction": 0.33,
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"actual_file": "main/1-result.txt",
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"expected_file": "1-expected.txt"
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},
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{
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"method": "diff",
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"description": "Two",
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"deduction": 0.33,
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"actual_file": "main/2-result.txt",
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"expected_file": "2-expected.txt"
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},
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{
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"method": "diff",
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"description": "Three",
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"deduction": 0.33,
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"actual_file": "main/3-result.txt",
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"expected_file": "3-expected.txt"
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}
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],
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"containers": [
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{
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"server": true,
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"container_name": "db_example_postgres",
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"container_image": "submitty/tutorial:tutorial_18"
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},
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{
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"container_name": "main",
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"container_image" : "submitty/tutorial:database_client",
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"commands": ["python3 sql_runner.py"]
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}
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]
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}
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]
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}

‎examples/18_postgres_database/config/test_input/sql_runner.py

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import psycopg2
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import psycopg2.extras
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import csv
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import sys
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import time
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import re
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from timeit import default_timer as timer
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conn_string = "host='db_example_postgres' dbname='contributors' user='contributors_reader' password='contributors_reader'"
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def err(message):
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print(message, file=sys.stderr)
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def log_error(message):
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with open('connection_errors.txt', 'a') as log_file:
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log_file.write(message)
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log_file.write('\n')
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def log_query_metrics(message):
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with open('query_metrics.txt', 'a') as log_file:
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log_file.write(message + '\n')
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def get_connection():
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count = 0
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conn = None
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t = timer()
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while not conn and count < 120:
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count += 1
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try:
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conn = psycopg2.connect(conn_string)
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except psycopg2.OperationalError as op_error:
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time.sleep(0.25)
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if conn:
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elapsed = timer() - t
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log_query_metrics(f"Connection established after {elapsed:.3f} seconds")
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else:
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err("Could not establish connection")
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return conn
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def get_cursor(conn):
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t = timer()
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cursor = conn.cursor(cursor_factory=psycopg2.extras.DictCursor)
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log_query_metrics(f"Cursor get in {(timer() - t):.3f} seconds")
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return cursor
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def run_query(cursor, query):
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cursor.execute(query)
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records = cursor.fetchall()
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return records
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def run_cost(cursor, query):
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cost_query = "EXPLAIN ANALYZE " + query
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cursor.execute(cost_query)
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records = cursor.fetchone()
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if len(records) == 0:
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return 0
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cost = re.search('(cost=)([0-9]+.\d\d)', records[0])
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time = re.search('(time=)([0-9]+.\d\d\d)', records[0])
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return float(cost[2]), float(time[2])
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def load_query(path):
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with open(path, 'r') as query_file:
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contents = query_file.readlines()
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lines = map(lambda bytes: str(bytes), contents)
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no_comments = filter(lambda line: not line.lstrip().startswith('--'), lines)
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no_bom = list(map(lambda line: line.replace('\xef\xbb\xbf', ''), no_comments))
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joined = ''.join(no_bom)
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split = joined.split(';')
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return split[0]
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def main():
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conn = get_connection()
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if conn == None:
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err('Connection failed')
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return
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curr = get_cursor(conn)
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for num in range(1, 4):
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try:
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input_file = str(num) + ".sql"
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output_file = str(num) + "-result.txt"
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query = load_query(input_file)
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result = run_query(curr, query)
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cost, time = run_cost(curr, query)
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log_query_metrics(f"Query {num:d} run in {time:.3f} sec with cost {cost:.2f}")
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with open(output_file, 'w', newline='', encoding='utf-8') as result_file:
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writer = csv.writer(result_file, lineterminator='\n')
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writer.writerow([attr for attr in result[0].keys()])
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for t in result:
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writer.writerow(t)
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except:
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err("Solution for %d raised exception %s" % (num, sys.exc_info()))
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if __name__ == '__main__':
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main()

‎examples/18_postgres_database/config/test_output/1-expected.txt

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firstname,lastname,startyear
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Evan,Maicus,2016
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Ana,Milanova,2016
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Jeramey,Tyler,2016
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Garrett,Chang,2016
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Robert,Patterson,2016

‎examples/18_postgres_database/config/test_output/2-expected.txt

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count
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36

‎examples/18_postgres_database/config/test_output/3-expected.txt

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contributor,tenure
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Samuel Breese,4
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Brandon Drumheller,4
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Timothy Cyrus,2
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Elizabeth Dinella,2
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Justin LaPre,2
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Gagan Kumar,1
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Rylan O'Connell,1
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John (Jack) Hulton,1
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Alex Belsten,1
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Richard Collins,1
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Jared Okun,1
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Salles Viana Gomes de Magalhaes,1
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Victor Nazzaro,1
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Joanna Ng,1
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Nick Roper,1
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Tushar Gurjar,1

‎examples/18_postgres_database/setup/Dockerfile

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FROM postgres:12
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COPY ./setup-contrib.sql /docker-entrypoint-initdb.d/1-setup.sql
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COPY ./contributors.sql /docker-entrypoint-initdb.d/2-data.sql
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COPY ./setup-users.sql /docker-entrypoint-initdb.d/3-users.sql
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RUN apt-get update \
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&& apt-get -y --no-install-recommends install \
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grep \
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libseccomp-dev \
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libseccomp2 \
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procps \
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&& rm -rf /var/lib/apt/lists/*
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RUN apt-get update \
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&& apt-get install -y --no-install-recommends wget gnupg \
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&& echo "deb http://apt.llvm.org/buster/ llvm-toolchain-buster-7 main" >> /etc/apt/sources.list \
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&& echo "deb-src http://apt.llvm.org/buster/ llvm-toolchain-buster-7 main" >> /etc/apt/sources.list \
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&& wget -O - http://apt.llvm.org/llvm-snapshot.gpg.key|apt-key add - \
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&& apt-get update \
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&& apt-get -y --no-install-recommends install \
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clang-7 \
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&& apt-get purge -y --auto-remove wget gnupg \
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&& rm -rf /var/lib/apt/lists/* \
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&& ln -s /usr/bin/clang-7 /usr/bin/clang \
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&& ln -s /usr/bin/clang++-7 /usr/bin/clang++
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‎examples/18_postgres_database/setup/contributors.sql

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-- CREATE DATABASE contributors WITH TEMPLATE = template0 ENCODING = 'UTF8' LC_COLLATE = 'en_US.UTF-8' LC_CTYPE = 'en_US.UTF-8';
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ALTER DATABASE contributors OWNER TO contributors;
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\connect contributors
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CREATE TABLE contributors(
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userid bigint,
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firstname character varying(255),
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lastname character varying(255),
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startyear bigint,
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endyear bigint,
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role character varying(255),
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PRIMARY KEY(firstname, lastname)
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);
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ALTER TABLE contributors OWNER TO contributors;
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INSERT INTO contributors (userid, firstname, lastname, startyear, endyear, role)
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VALUES
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(1, 'Barbara', 'Cutler', 2014, NULL, 'Project Manager'),
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(2, 'Matthew', 'Peveler', 2014, NULL, 'Project Manager'),
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(3, 'Evan', 'Maicus', 2016, NULL, 'Project Manager'),
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(4, 'Eli', 'Schiff', 2019, NULL, 'Developer'),
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(5, 'Ben', 'Kelly', 2019, NULL, 'Developer'),
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(6, 'Saketh', 'Dargula', 2019, NULL, 'Developer'),
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(7, 'Kevin', 'McKinney', 2019, NULL, 'Developer'),
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(8, 'Jacob', 'McKnight', 2019, NULL, 'Developer'),
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(9, 'Alexa', 'Orosz', 2019, NULL, 'Developer'),
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(10, 'Maya', 'Tung', 2019, NULL, 'Developer'),
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(11, 'Xiao', 'Han,', 2019, NULL, 'Developer'),
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(12, 'Fon', 'Noel,', 2019, NULL, 'Developer'),
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(13, 'Drumil', 'Patil,', 2019, NULL, 'Developer'),
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(14, 'Anubhav', 'Singh,', 2019, NULL, 'Developer'),
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(15, 'Preston', 'Carman', 2019, NULL, 'Developer'),
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(16, 'Matthew', 'Garber', 2019, NULL, 'Developer'),
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(17, 'Matthew', 'Raneri', 2019, NULL, 'Developer'),
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(18, 'Thomas', 'Shweh', 2019, NULL, 'Developer'),
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(19, 'Kasra', 'Sheik', 2018, 2019, 'Developer'),
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(20, 'Ryan', 'Waddell', 2018, 2019, 'Developer'),
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(21, 'Victor', 'Li', 2018, 2019, 'Developer'),
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(22, 'Eric', 'Tran', 2018, NULL, 'Developer'),
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(23, 'Kevin', 'Mackenzie', 2018, NULL, 'Developer'),
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(24, 'Glenn', 'Smith', 2018, NULL, 'Developer'),
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(25, 'Andrew', 'Aikens', 2017, NULL, 'Developer'),
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(26, 'Shail', 'Patel', 2018, NULL, 'Developer'),
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(27, 'Leon', 'Montealegre', 2017, NULL, 'Developer'),
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(28, 'Buster', 'Holzbauer', 2017, NULL, 'Developer'),
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(29, 'Ana', 'Milanova', 2016, NULL, 'Developer'),
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(30, 'Steven', 'Lindsey', 2014, NULL, 'Developer'),
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(31, 'Peter', 'Bailie', 2014, NULL, 'Developer'),
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(32, 'David', 'Goldschmidt', 2014, NULL, 'Developer'),
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(33, 'Konstantin', 'Kuzmin', 2018, NULL, 'Developer'),
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(34, 'John (Jack)', 'Hulton', 2018, 2018, 'Developer'),
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(35, 'Victor', 'Nazzaro', 2018, 2018, 'Developer'),
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(36, 'Joanna', 'Ng', 2018, 2018, 'Developer'),
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(37, 'Nick', 'Roper', 2018, 2018, 'Developer'),
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(38, 'Tushar', 'Gurjar', 2018, 2018, 'Developer'),
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(39, 'Gagan', 'Kumar', 2018, 2018, 'Developer'),
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(40, 'Timothy', 'Cyrus', 2017, 2018, 'Developer'),
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(41, 'Rylan', 'O''Connell', 2018, 2018, 'Developer'),
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(42, 'Salles', 'Viana Gomes de Magalhaes', 2018, 2018, 'Developer'),
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(43, 'Alex', 'Belsten', 2018, 2018, 'Developer'),
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(44, 'Richard', 'Collins', 2018, 2018, 'Developer'),
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(45, 'Jared', 'Okun', 2018, 2018, 'Developer'),
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(46, 'Elizabeth', 'Dinella', 2017, 2018, 'Developer'),
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(47, 'Justin', 'LaPre', 2017, 2018, 'Developer'),
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(48, 'Samuel', 'Breese', 2015, 2018, 'Developer'),
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(49, 'Brandon', 'Drumheller', 2015, 2018, 'Developer'),
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(50, 'Marisa', 'Lee', 2017, 2017, 'Developer'),
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(51, 'Jessica', 'Wang', 2017, 2017, 'Developer'),
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(52, 'James', 'Anderson', 2017, 2017, 'Developer'),
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(53, 'Joshua', 'Barthlemess', 2017, 2017, 'Developer'),
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(54, 'Andrew', 'Ma', 2017, 2017, 'Developer'),
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(55, 'Jason', 'Parham', 2014, 2017, 'Developer'),
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(56, 'Jeramey', 'Tyler', 2016, 2017, 'Developer'),
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(57, 'Zishan', 'Huang', 2015, 2016, 'Developer'),
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(58, 'Garrett', 'Chang', 2016, 2016, 'Developer'),
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(59, 'Robert', 'Patterson', 2016, 2016, 'Developer'),
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(60, 'Andrea', 'Wong', 2015, 2016, 'Developer'),
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(61, 'Melissa', 'Lindquist', 2015, 2016, 'Developer'),
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(62, 'Beverly', 'Sihsobhon', 2015, 2016, 'Developer'),
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(63, 'Marina', 'Espinoza', 2015, 2015, 'Developer'),
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(64, 'Chris', 'Berger', 2014, 2014, 'Developer'),
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(65, 'Seema', 'Bhaskar', 2014, 2014, 'Developer'),
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(66, 'Stanley', 'Cheung', 2014, 2014, 'Developer'),
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(67, 'Jesse', 'Freitas', 2014, 2014, 'Developer'),
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(68, 'Severin', 'Ibarluzea', 2014, 2014, 'Developer'),
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(69, 'Kiana', 'McNellis', 2014, 2014, 'Developer'),
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(70, 'Kienan', 'Knight-Boehm', 2014, 2014, 'Developer'),
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(71, 'Tyler', 'Shepard', 2014, 2014, 'Developer'),
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(72, 'Sam', 'Seng', 2014, 2014, 'Developer'),
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(73, 'Victor', 'Zhu', 2014, 2014, 'Developer'),
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(74, 'Andrew', 'Fasano', NULL, NULL, 'Security'),
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(75, 'Markus', 'Gaasedelen', NULL, NULL, 'Security'),
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(76, 'Amy', 'Burnett', NULL, NULL, 'Security'),
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(77, 'Aidan', 'Noll', NULL, NULL, 'Security'),
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(78, 'Toshi', 'Piazza', NULL, NULL, 'Security'),
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(79, 'Zachary', 'Wimer', NULL, NULL, 'Security');

‎examples/18_postgres_database/setup/setup-contrib.sql

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CREATE USER contributors WITH PASSWORD 'contributors';
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CREATE DATABASE contributors;
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GRANT ALL PRIVILEGES ON DATABASE contributors TO contributors;

‎examples/18_postgres_database/setup/setup-users.sql

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CREATE USER contributors_reader WITH PASSWORD 'contributors_reader';
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\connect contributors
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GRANT SELECT ON ALL TABLES IN SCHEMA public TO contributors_reader;

‎examples/18_postgres_database/submissions/submission.zip

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