Dockerfile to build pbsuite image
download the PBsuite archive from:
download the right blasr version from:
- to build this dockerimage place the blasr binary (look for executable rights before) and the PBSuite_15.8.24.tgz file in the clone of this git repository
sudo docker build -t "pbsuite" .
The workingdirectory is set to /data --> place all your files in your current workingdir and add the path in your xml file as follow:
/data/assembly.fasta or /data/pacbioreads.fasta
sudo docker run -it -v $PWD:/data pbsuite Jelly.py Workingstep Your_Protocol.xml