From 4ce54a6580cfa3cd43999f1ed6ff004ba7d117c3 Mon Sep 17 00:00:00 2001 From: Paul Schmiedmayer Date: Wed, 22 Nov 2023 02:19:14 +0100 Subject: [PATCH] Adds a FHIR Standard, HealthKit Adapter, Mock Patient, and Interpretation Target (#11) # Adds a FHIR Standard, HealthKit Adapter, Mock Patient, and Interpretation Target ## :gear: Release Notes - New FHIR Standard: Integrated a new standard for developing FHIR-based digital health applications, ensuring compliance and ease of use with FHIR protocols. - HealthKit Adapter: Introduced an adapter for HealthKit, allowing for seamless integration and data exchange between HealthKit and FHIR resources. - Mock Patient Model: Added a mock patient model for testing and development purposes, enabling developers to simulate patient data and interactions based on FHIR R4 `Bundle`s. - Interpretation Target: Implemented an interpretation target to enhance the processing and analysis of FHIR resources including LLM-based interactions. ## :pencil: Code of Conduct & Contributing Guidelines By submitting creating this pull request, you agree to follow our [Code of Conduct](https://github.com/StanfordSpezi/.github/blob/main/CODE_OF_CONDUCT.md) and [Contributing Guidelines](https://github.com/StanfordSpezi/.github/blob/main/CONTRIBUTING.md): - [x] I agree to follow the [Code of Conduct](https://github.com/StanfordSpezi/.github/blob/main/CODE_OF_CONDUCT.md) and [Contributing Guidelines](https://github.com/StanfordSpezi/.github/blob/main/CONTRIBUTING.md). --- .github/workflows/build-and-test.yml | 8 +- .../workflows/monthly-markdown-link-check.yml | 19 + .github/workflows/pull_request.yml | 5 +- .gitignore | 2 +- .spi.yml | 2 +- .swiftlint.yml | 2 +- CITATION.cff | 2 +- CONTRIBUTORS.md | 2 +- LICENSE.md | 2 +- LICENSES/MIT.txt | 2 +- Package.swift | 45 +- README.md | 2 +- Sources/SpeziFHIR/Export.swift | 9 - .../{ => Extensions}/FHIR+Identifiable.swift | 4 +- Sources/SpeziFHIR/FHIR.swift | 53 + .../FHIRResource/FHIRResource+Category.swift | 568 + .../FHIRResource/FHIRResource+Search.swift | 33 + .../SpeziFHIR/FHIRResource/FHIRResource.swift | 153 + Sources/SpeziFHIR/FHIRStore.swift | 137 + .../SpeziFHIRHealthKit/FHIR+HealthKit.swift | 78 + .../FHIRResourceInterpreter.swift | 67 + .../FHIRResourceProcesser.swift | 76 + .../FHIRResourceSummary.swift | 67 + .../FHIRResourceSummaryView.swift | 56 + .../Resources/Localizable.xcstrings | 90 + .../Resources/Localizable.xcstrings.license | 5 + .../Settings/FHIRPrompt.swift | 69 + .../Settings/FHIRPromptSettingsView.swift | 56 + .../FHIRBundle+MockPatients.swift | 90 + .../FHIRBundle+Patient.swift | 28 + .../FHIRBundleSelector.swift | 82 + .../FHIRMockBundleSelector.swift | 40 + .../FoundationBundle+LoadBundle.swift | 33 + ..._1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json | 111574 ++++++++++++++ ...f-9e6a-b083-b6ee-0bb38f70ba50.json.license | 11 + ..._04f25f73-04b2-469c-3806-540417a0d61c.json | 98859 ++++++++++++ ...3-04b2-469c-3806-540417a0d61c.json.license | 11 + ..._79b1d90a-0eaf-be78-9bbf-91c638626012.json | 116218 +++++++++++++++ ...a-0eaf-be78-9bbf-91c638626012.json.license | 11 + ..._38f38890-b80f-6542-51d4-882c7b37b0bf.json | 114642 ++++++++++++++ ...0-b80f-6542-51d4-882c7b37b0bf.json.license | 11 + Tests/SpeziFHIRTests/SpeziFHIRTests.swift | 2 +- .../Contents.json.license | 2 +- .../AppIcon.appiconset/Contents.json.license | 2 +- .../Assets.xcassets/Contents.json.license | 2 +- Tests/UITests/TestApp/ContentView.swift | 74 + Tests/UITests/TestApp/ExampleModule.swift | 28 + .../TestApp/MockPatientSelection.swift | 37 + Tests/UITests/TestApp/PromptSettings.swift | 48 + Tests/UITests/TestApp/TestApp.swift | 4 +- Tests/UITests/TestApp/TestAppDelegate.swift | 7 +- .../FHIRMockDataStorageProviderTests.swift | 73 +- .../UITests.xcodeproj/TestApp.xctestplan | 15 + .../TestApp.xctestplan.license | 2 +- .../UITests/UITests.xcodeproj/project.pbxproj | 63 +- .../UITests.xcodeproj/project.pbxproj.license | 2 +- .../contents.xcworkspacedata.license | 2 +- .../IDEWorkspaceChecks.plist.license | 2 +- .../xcshareddata/swiftpm/Package.resolved | 76 +- .../swiftpm/Package.resolved.license | 2 +- .../xcshareddata/xcschemes/TestApp.xcscheme | 64 +- .../xcschemes/TestApp.xcscheme.license | 2 +- 62 files changed, 443674 insertions(+), 59 deletions(-) create mode 100644 .github/workflows/monthly-markdown-link-check.yml delete mode 100644 Sources/SpeziFHIR/Export.swift rename Sources/SpeziFHIR/{ => Extensions}/FHIR+Identifiable.swift (67%) create mode 100644 Sources/SpeziFHIR/FHIR.swift create mode 100644 Sources/SpeziFHIR/FHIRResource/FHIRResource+Category.swift create mode 100644 Sources/SpeziFHIR/FHIRResource/FHIRResource+Search.swift create mode 100644 Sources/SpeziFHIR/FHIRResource/FHIRResource.swift create mode 100644 Sources/SpeziFHIR/FHIRStore.swift create mode 100644 Sources/SpeziFHIRHealthKit/FHIR+HealthKit.swift create mode 100644 Sources/SpeziFHIRInterpretation/FHIRResourceInterpreter.swift create mode 100644 Sources/SpeziFHIRInterpretation/FHIRResourceProcesser.swift create mode 100644 Sources/SpeziFHIRInterpretation/FHIRResourceSummary.swift create mode 100644 Sources/SpeziFHIRInterpretation/FHIRResourceSummaryView.swift create mode 100644 Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings create mode 100644 Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings.license create mode 100644 Sources/SpeziFHIRInterpretation/Settings/FHIRPrompt.swift create mode 100644 Sources/SpeziFHIRInterpretation/Settings/FHIRPromptSettingsView.swift create mode 100644 Sources/SpeziFHIRMockPatients/FHIRBundle+MockPatients.swift create mode 100644 Sources/SpeziFHIRMockPatients/FHIRBundle+Patient.swift create mode 100644 Sources/SpeziFHIRMockPatients/FHIRBundleSelector.swift create mode 100644 Sources/SpeziFHIRMockPatients/FHIRMockBundleSelector.swift create mode 100644 Sources/SpeziFHIRMockPatients/FoundationBundle+LoadBundle.swift create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json.license create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Maye976_Dickinson688_04f25f73-04b2-469c-3806-540417a0d61c.json create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Maye976_Dickinson688_04f25f73-04b2-469c-3806-540417a0d61c.json.license create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012.json create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012.json.license create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json create mode 100644 Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json.license create mode 100644 Tests/UITests/TestApp/ContentView.swift create mode 100644 Tests/UITests/TestApp/ExampleModule.swift create mode 100644 Tests/UITests/TestApp/MockPatientSelection.swift create mode 100644 Tests/UITests/TestApp/PromptSettings.swift diff --git a/.github/workflows/build-and-test.yml b/.github/workflows/build-and-test.yml index 6108210..8fac4a6 100644 --- a/.github/workflows/build-and-test.yml +++ b/.github/workflows/build-and-test.yml @@ -1,7 +1,7 @@ # # This source file is part of the Stanford Spezi open-source project # -# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) # # SPDX-License-Identifier: MIT # @@ -20,9 +20,9 @@ jobs: name: Build and Test Swift Package uses: StanfordSpezi/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2 with: - artifactname: SpeziFHIR.xcresult + artifactname: SpeziFHIR-Package.xcresult runsonlabels: '["macOS", "self-hosted"]' - scheme: SpeziFHIR + scheme: SpeziFHIR-Package buildandtestuitests: name: Build and Test UI Tests uses: StanfordSpezi/.github/.github/workflows/xcodebuild-or-fastlane.yml@v2 @@ -36,4 +36,4 @@ jobs: needs: [buildandtest, buildandtestuitests] uses: StanfordSpezi/.github/.github/workflows/create-and-upload-coverage-report.yml@v2 with: - coveragereports: SpeziFHIR.xcresult TestApp.xcresult + coveragereports: SpeziFHIR-Package.xcresult TestApp.xcresult diff --git a/.github/workflows/monthly-markdown-link-check.yml b/.github/workflows/monthly-markdown-link-check.yml new file mode 100644 index 0000000..9a2d1f2 --- /dev/null +++ b/.github/workflows/monthly-markdown-link-check.yml @@ -0,0 +1,19 @@ +# +# This source file is part of the Stanford Spezi open source project +# +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +# +# SPDX-License-Identifier: MIT +# + +name: Monthly Markdown Link Check + +on: + # Runs at midnight on the first of every month + schedule: + - cron: "0 0 1 * *" + +jobs: + markdown_link_check: + name: Markdown Link Check + uses: StanfordBDHG/.github/.github/workflows/markdown-link-check.yml@v2 diff --git a/.github/workflows/pull_request.yml b/.github/workflows/pull_request.yml index eb53387..ebe1460 100644 --- a/.github/workflows/pull_request.yml +++ b/.github/workflows/pull_request.yml @@ -1,7 +1,7 @@ # # This source file is part of the Stanford Spezi open-source project # -# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) # # SPDX-License-Identifier: MIT # @@ -19,3 +19,6 @@ jobs: swiftlint: name: SwiftLint uses: StanfordSpezi/.github/.github/workflows/swiftlint.yml@v2 + markdown_link_check: + name: Markdown Link Check + uses: StanfordBDHG/.github/.github/workflows/markdown-link-check.yml@v2 diff --git a/.gitignore b/.gitignore index 35f2458..e26d014 100644 --- a/.gitignore +++ b/.gitignore @@ -1,7 +1,7 @@ # # This source file is part of the Stanford Spezi open-source project # -# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) # # SPDX-License-Identifier: MIT # diff --git a/.spi.yml b/.spi.yml index 185204b..82b4f05 100644 --- a/.spi.yml +++ b/.spi.yml @@ -1,7 +1,7 @@ # # This source file is part of the Stanford Spezi open-source project # -# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) # # SPDX-License-Identifier: MIT # diff --git a/.swiftlint.yml b/.swiftlint.yml index 0a7fab1..d8a26d0 100644 --- a/.swiftlint.yml +++ b/.swiftlint.yml @@ -1,7 +1,7 @@ # # This source file is part of the Stanford Spezi open source project # -# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) # # SPDX-License-Identifier: MIT # diff --git a/CITATION.cff b/CITATION.cff index eec8ccf..93fcf2a 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,7 +1,7 @@ # # This source file is part of the Stanford Spezi open-source project # -# SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +# SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) # # SPDX-License-Identifier: MIT # diff --git a/CONTRIBUTORS.md b/CONTRIBUTORS.md index deb938a..1210090 100644 --- a/CONTRIBUTORS.md +++ b/CONTRIBUTORS.md @@ -2,7 +2,7 @@ This source file is part of the Stanford Spezi open-source project. -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT diff --git a/LICENSE.md b/LICENSE.md index 6998b5f..599ed6f 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +Copyright (c) 2023 Stanford University and the project authors (see CONTRIBUTORS.md) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: diff --git a/LICENSES/MIT.txt b/LICENSES/MIT.txt index 6998b5f..599ed6f 100644 --- a/LICENSES/MIT.txt +++ b/LICENSES/MIT.txt @@ -1,6 +1,6 @@ MIT License -Copyright (c) 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +Copyright (c) 2023 Stanford University and the project authors (see CONTRIBUTORS.md) Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: diff --git a/Package.swift b/Package.swift index b382db3..9216e9c 100644 --- a/Package.swift +++ b/Package.swift @@ -3,7 +3,7 @@ // // This source file is part of the Stanford Spezi open-source project // -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) // // SPDX-License-Identifier: MIT // @@ -18,18 +18,55 @@ let package = Package( .iOS(.v17) ], products: [ - .library(name: "SpeziFHIR", targets: ["SpeziFHIR"]) + .library(name: "SpeziFHIR", targets: ["SpeziFHIR"]), + .library(name: "SpeziFHIRHealthKit", targets: ["SpeziFHIRHealthKit"]), + .library(name: "SpeziFHIRInterpretation", targets: ["SpeziFHIRInterpretation"]), + .library(name: "SpeziFHIRMockPatients", targets: ["SpeziFHIRMockPatients"]) ], dependencies: [ .package(url: "https://github.com/apple/FHIRModels", .upToNextMinor(from: "0.5.0")), - .package(url: "https://github.com/StanfordSpezi/Spezi", .upToNextMinor(from: "0.8.0")) + .package(url: "https://github.com/StanfordBDHG/HealthKitOnFHIR", .upToNextMinor(from: "0.2.4")), + .package(url: "https://github.com/StanfordSpezi/Spezi", .upToNextMinor(from: "0.8.0")), + .package(url: "https://github.com/StanfordSpezi/SpeziHealthKit.git", .upToNextMinor(from: "0.4.0")), + .package(url: "https://github.com/StanfordSpezi/SpeziML.git", .upToNextMinor(from: "0.3.1")) ], targets: [ .target( name: "SpeziFHIR", dependencies: [ .product(name: "Spezi", package: "Spezi"), - .product(name: "ModelsR4", package: "FHIRModels") + .product(name: "ModelsR4", package: "FHIRModels"), + .product(name: "ModelsDSTU2", package: "FHIRModels"), + .product(name: "HealthKitOnFHIR", package: "HealthKitOnFHIR") + ] + ), + .target( + name: "SpeziFHIRHealthKit", + dependencies: [ + .target(name: "SpeziFHIR"), + .product(name: "HealthKitOnFHIR", package: "HealthKitOnFHIR"), + .product(name: "SpeziHealthKit", package: "SpeziHealthKit") + ] + ), + .target( + name: "SpeziFHIRInterpretation", + dependencies: [ + .target(name: "SpeziFHIR"), + .product(name: "Spezi", package: "Spezi"), + .product(name: "ModelsR4", package: "FHIRModels"), + .product(name: "SpeziOpenAI", package: "SpeziML") + ], + resources: [ + .process("Resources") + ] + ), + .target( + name: "SpeziFHIRMockPatients", + dependencies: [ + .target(name: "SpeziFHIR") + ], + resources: [ + .process("Resources") ] ), .testTarget( diff --git a/README.md b/README.md index 53f346f..e847e14 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ This source file is part of the Stanford Spezi open-source project. -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT diff --git a/Sources/SpeziFHIR/Export.swift b/Sources/SpeziFHIR/Export.swift deleted file mode 100644 index 2a05d89..0000000 --- a/Sources/SpeziFHIR/Export.swift +++ /dev/null @@ -1,9 +0,0 @@ -// -// This source file is part of the Stanford Spezi open-source project -// -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) -// -// SPDX-License-Identifier: MIT -// - -@_exported import ModelsR4 diff --git a/Sources/SpeziFHIR/FHIR+Identifiable.swift b/Sources/SpeziFHIR/Extensions/FHIR+Identifiable.swift similarity index 67% rename from Sources/SpeziFHIR/FHIR+Identifiable.swift rename to Sources/SpeziFHIR/Extensions/FHIR+Identifiable.swift index de4fcd2..60c56e4 100644 --- a/Sources/SpeziFHIR/FHIR+Identifiable.swift +++ b/Sources/SpeziFHIR/Extensions/FHIR+Identifiable.swift @@ -1,7 +1,7 @@ // -// This source file is part of the Stanford Spezi open-source project +// This source file is part of the Stanford Spezi open source project // -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) // // SPDX-License-Identifier: MIT // diff --git a/Sources/SpeziFHIR/FHIR.swift b/Sources/SpeziFHIR/FHIR.swift new file mode 100644 index 0000000..a68f972 --- /dev/null +++ b/Sources/SpeziFHIR/FHIR.swift @@ -0,0 +1,53 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Spezi + + +/// Spezi standard to support the development of FHIR-based digital health applications. +/// +/// > Important: If your application is not yet configured to use Spezi, follow the [Spezi setup article](https://swiftpackageindex.com/stanfordspezi/spezi/documentation/spezi/initial-setup) setup the core Spezi infrastructure. +/// +/// The standard needs to be registered in a Spezi-based application using the [`configuration`](https://swiftpackageindex.com/stanfordspezi/spezi/documentation/spezi/speziappdelegate/configuration) +/// in a [`SpeziAppDelegate`](https://swiftpackageindex.com/stanfordspezi/spezi/documentation/spezi/speziappdelegate): +/// ```swift +/// class ExampleAppDelegate: SpeziAppDelegate { +/// override var configuration: Configuration { +/// Configuration(standard: FHIR()) { +/// // ... +/// } +/// } +/// } +/// ``` +/// > Tip: You can learn more about a [`Standard` in the Spezi documentation](https://swiftpackageindex.com/stanfordspezi/spezi/documentation/spezi/standard). +/// +/// +/// ## Usage +/// +/// The ``FHIR`` standard injects an ``FHIRStore`` instance in the SwiftUI environment to handle the storage and management of FHIR resources. +/// +/// ```swift +/// class ContentView: View { +/// @Environment(FHIRStore.self) var store +/// +/// +/// var body: some View { +/// // ... +/// } +/// } +/// ``` +/// +/// > Tip: You can learn more about how to use the store in the ``FHIRStore`` documentation. +public actor FHIR: Standard { + @Model public private(set) var store: FHIRStore + + + public init() { + self._store = Model(wrappedValue: FHIRStore()) + } +} diff --git a/Sources/SpeziFHIR/FHIRResource/FHIRResource+Category.swift b/Sources/SpeziFHIR/FHIRResource/FHIRResource+Category.swift new file mode 100644 index 0000000..2a7b0b8 --- /dev/null +++ b/Sources/SpeziFHIR/FHIRResource/FHIRResource+Category.swift @@ -0,0 +1,568 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import enum ModelsR4.ResourceProxy +import enum ModelsDSTU2.ResourceProxy + + +// swiftlint:disable file_length +// We disable the file length here to ensure that we cover all switch cases explicitly. +extension FHIRResource { + /// Enum representing different categories of FHIR resources. + /// This categorization helps in classifying FHIR resources into common healthcare scenarios and types. + enum FHIRResourceCategory { + /// Represents an observation-type resource (e.g., patient measurements, lab results). + case observation + /// Represents an encounter-type resource (e.g., patient visits, admissions). + case encounter + /// Represents a condition-type resource (e.g., diagnoses, patient conditions). + case condition + /// Represents a diagnostic-type resource (e.g., radiology, pathology reports). + case diagnostic + /// Represents a procedure-type resource (e.g., surgical procedures, therapies). + case procedure + /// Represents an immunization-type resource (e.g., vaccine administrations). + case immunization + /// Represents an allergy or intolerance-type resource. + case allergyIntolerance + /// Represents a medication-type resource (e.g., prescriptions, medication administrations). + case medication + /// Represents other types of resources not covered by the above categories. + case other + } + + var storeKeyPath: KeyPath { + switch self.category { + case .observation: + \.observations + case .encounter: + \.encounters + case .condition: + \.conditions + case .diagnostic: + \.diagnostics + case .procedure: + \.procedures + case .immunization: + \.immunizations + case .allergyIntolerance: + \.allergyIntolerances + case .medication: + \.medications + case .other: + \.otherResources + } + } + + + /// Category of the FHIR resource. + /// + /// Analyzes the type of the underlying resource and assigns it to an appropriate category. + var category: FHIRResourceCategory { + switch versionedResource { + case let .r4(resource): + switch ResourceProxy(with: resource) { + case .account: + return FHIRResourceCategory.other + case .activityDefinition: + return FHIRResourceCategory.other + case .adverseEvent: + return FHIRResourceCategory.other + case .allergyIntolerance: + return FHIRResourceCategory.allergyIntolerance + case .appointment: + return FHIRResourceCategory.other + case .appointmentResponse: + return FHIRResourceCategory.other + case .auditEvent: + return FHIRResourceCategory.other + case .basic: + return FHIRResourceCategory.other + case .binary: + return FHIRResourceCategory.other + case .biologicallyDerivedProduct: + return FHIRResourceCategory.other + case .bodyStructure: + return FHIRResourceCategory.other + case .bundle: + return FHIRResourceCategory.other + case .capabilityStatement: + return FHIRResourceCategory.other + case .carePlan: + return FHIRResourceCategory.other + case .careTeam: + return FHIRResourceCategory.other + case .catalogEntry: + return FHIRResourceCategory.other + case .chargeItem: + return FHIRResourceCategory.other + case .chargeItemDefinition: + return FHIRResourceCategory.other + case .claim: + return FHIRResourceCategory.other + case .claimResponse: + return FHIRResourceCategory.other + case .clinicalImpression: + return FHIRResourceCategory.other + case .codeSystem: + return FHIRResourceCategory.other + case .communication: + return FHIRResourceCategory.other + case .communicationRequest: + return FHIRResourceCategory.other + case .compartmentDefinition: + return FHIRResourceCategory.other + case .composition: + return FHIRResourceCategory.other + case .conceptMap: + return FHIRResourceCategory.other + case .condition: + return FHIRResourceCategory.condition + case .consent: + return FHIRResourceCategory.other + case .contract: + return FHIRResourceCategory.other + case .coverage: + return FHIRResourceCategory.other + case .coverageEligibilityRequest: + return FHIRResourceCategory.other + case .coverageEligibilityResponse: + return FHIRResourceCategory.other + case .detectedIssue: + return FHIRResourceCategory.other + case .device: + return FHIRResourceCategory.other + case .deviceDefinition: + return FHIRResourceCategory.other + case .deviceMetric: + return FHIRResourceCategory.other + case .deviceRequest: + return FHIRResourceCategory.other + case .deviceUseStatement: + return FHIRResourceCategory.other + case .diagnosticReport: + return FHIRResourceCategory.diagnostic + case .documentManifest: + return FHIRResourceCategory.other + case .documentReference: + return FHIRResourceCategory.other + case .domainResource: + return FHIRResourceCategory.other + case .effectEvidenceSynthesis: + return FHIRResourceCategory.other + case .encounter: + return FHIRResourceCategory.encounter + case .endpoint: + return FHIRResourceCategory.other + case .enrollmentRequest: + return FHIRResourceCategory.other + case .enrollmentResponse: + return FHIRResourceCategory.other + case .episodeOfCare: + return FHIRResourceCategory.other + case .eventDefinition: + return FHIRResourceCategory.other + case .evidence: + return FHIRResourceCategory.other + case .evidenceVariable: + return FHIRResourceCategory.other + case .exampleScenario: + return FHIRResourceCategory.other + case .explanationOfBenefit: + return FHIRResourceCategory.other + case .familyMemberHistory: + return FHIRResourceCategory.other + case .flag: + return FHIRResourceCategory.other + case .goal: + return FHIRResourceCategory.other + case .graphDefinition: + return FHIRResourceCategory.other + case .group: + return FHIRResourceCategory.other + case .guidanceResponse: + return FHIRResourceCategory.other + case .healthcareService: + return FHIRResourceCategory.other + case .imagingStudy: + return FHIRResourceCategory.other + case .immunization: + return FHIRResourceCategory.immunization + case .immunizationEvaluation: + return FHIRResourceCategory.immunization + case .immunizationRecommendation: + return FHIRResourceCategory.immunization + case .implementationGuide: + return FHIRResourceCategory.other + case .insurancePlan: + return FHIRResourceCategory.other + case .invoice: + return FHIRResourceCategory.other + case .library: + return FHIRResourceCategory.other + case .linkage: + return FHIRResourceCategory.other + case .list: + return FHIRResourceCategory.other + case .location: + return FHIRResourceCategory.other + case .measure: + return FHIRResourceCategory.other + case .measureReport: + return FHIRResourceCategory.other + case .media: + return FHIRResourceCategory.other + case .medication: + return FHIRResourceCategory.medication + case .medicationAdministration: + return FHIRResourceCategory.medication + case .medicationDispense: + return FHIRResourceCategory.medication + case .medicationKnowledge: + return FHIRResourceCategory.medication + case .medicationRequest: + return FHIRResourceCategory.medication + case .medicationStatement: + return FHIRResourceCategory.medication + case .medicinalProduct: + return FHIRResourceCategory.other + case .medicinalProductAuthorization: + return FHIRResourceCategory.other + case .medicinalProductContraindication: + return FHIRResourceCategory.other + case .medicinalProductIndication: + return FHIRResourceCategory.other + case .medicinalProductIngredient: + return FHIRResourceCategory.other + case .medicinalProductInteraction: + return FHIRResourceCategory.other + case .medicinalProductManufactured: + return FHIRResourceCategory.other + case .medicinalProductPackaged: + return FHIRResourceCategory.other + case .medicinalProductPharmaceutical: + return FHIRResourceCategory.other + case .medicinalProductUndesirableEffect: + return FHIRResourceCategory.other + case .messageDefinition: + return FHIRResourceCategory.other + case .messageHeader: + return FHIRResourceCategory.other + case .molecularSequence: + return FHIRResourceCategory.other + case .namingSystem: + return FHIRResourceCategory.other + case .nutritionOrder: + return FHIRResourceCategory.other + case .observation: + return FHIRResourceCategory.observation + case .observationDefinition: + return FHIRResourceCategory.observation + case .operationDefinition: + return FHIRResourceCategory.other + case .operationOutcome: + return FHIRResourceCategory.other + case .organization: + return FHIRResourceCategory.other + case .organizationAffiliation: + return FHIRResourceCategory.other + case .parameters: + return FHIRResourceCategory.other + case .patient: + return FHIRResourceCategory.other + case .paymentNotice: + return FHIRResourceCategory.other + case .paymentReconciliation: + return FHIRResourceCategory.other + case .person: + return FHIRResourceCategory.other + case .planDefinition: + return FHIRResourceCategory.other + case .practitioner: + return FHIRResourceCategory.other + case .practitionerRole: + return FHIRResourceCategory.other + case .procedure: + return FHIRResourceCategory.procedure + case .provenance: + return FHIRResourceCategory.other + case .questionnaire: + return FHIRResourceCategory.other + case .questionnaireResponse: + return FHIRResourceCategory.other + case .relatedPerson: + return FHIRResourceCategory.other + case .requestGroup: + return FHIRResourceCategory.other + case .researchDefinition: + return FHIRResourceCategory.other + case .researchElementDefinition: + return FHIRResourceCategory.other + case .researchStudy: + return FHIRResourceCategory.other + case .researchSubject: + return FHIRResourceCategory.other + case .resource: + return FHIRResourceCategory.other + case .riskAssessment: + return FHIRResourceCategory.other + case .riskEvidenceSynthesis: + return FHIRResourceCategory.other + case .schedule: + return FHIRResourceCategory.other + case .searchParameter: + return FHIRResourceCategory.other + case .serviceRequest: + return FHIRResourceCategory.other + case .slot: + return FHIRResourceCategory.other + case .specimen: + return FHIRResourceCategory.other + case .specimenDefinition: + return FHIRResourceCategory.other + case .structureDefinition: + return FHIRResourceCategory.other + case .structureMap: + return FHIRResourceCategory.other + case .subscription: + return FHIRResourceCategory.other + case .substance: + return FHIRResourceCategory.other + case .substanceNucleicAcid: + return FHIRResourceCategory.other + case .substancePolymer: + return FHIRResourceCategory.other + case .substanceProtein: + return FHIRResourceCategory.other + case .substanceReferenceInformation: + return FHIRResourceCategory.other + case .substanceSourceMaterial: + return FHIRResourceCategory.other + case .substanceSpecification: + return FHIRResourceCategory.other + case .supplyDelivery: + return FHIRResourceCategory.other + case .supplyRequest: + return FHIRResourceCategory.other + case .task: + return FHIRResourceCategory.other + case .terminologyCapabilities: + return FHIRResourceCategory.other + case .testReport: + return FHIRResourceCategory.other + case .testScript: + return FHIRResourceCategory.other + case .valueSet: + return FHIRResourceCategory.other + case .verificationResult: + return FHIRResourceCategory.other + case .visionPrescription: + return FHIRResourceCategory.other + case .unrecognized: + return FHIRResourceCategory.other + } + case let .dstu2(resource): + switch ResourceProxy(with: resource) { + case .account: + return FHIRResourceCategory.other + case .allergyIntolerance: + return FHIRResourceCategory.allergyIntolerance + case .appointment: + return FHIRResourceCategory.other + case .appointmentResponse: + return FHIRResourceCategory.other + case .auditEvent: + return FHIRResourceCategory.other + case .basic: + return FHIRResourceCategory.other + case .binary: + return FHIRResourceCategory.other + case .bodySite: + return FHIRResourceCategory.other + case .bundle: + return FHIRResourceCategory.other + case .carePlan: + return FHIRResourceCategory.other + case .claim: + return FHIRResourceCategory.other + case .claimResponse: + return FHIRResourceCategory.other + case .clinicalImpression: + return FHIRResourceCategory.other + case .communication: + return FHIRResourceCategory.other + case .communicationRequest: + return FHIRResourceCategory.other + case .composition: + return FHIRResourceCategory.other + case .conceptMap: + return FHIRResourceCategory.other + case .condition: + return FHIRResourceCategory.condition + case .conformance: + return FHIRResourceCategory.other + case .contract: + return FHIRResourceCategory.other + case .coverage: + return FHIRResourceCategory.other + case .dataElement: + return FHIRResourceCategory.other + case .detectedIssue: + return FHIRResourceCategory.other + case .device: + return FHIRResourceCategory.other + case .deviceComponent: + return FHIRResourceCategory.other + case .deviceMetric: + return FHIRResourceCategory.other + case .deviceUseRequest: + return FHIRResourceCategory.other + case .deviceUseStatement: + return FHIRResourceCategory.other + case .diagnosticOrder: + return FHIRResourceCategory.diagnostic + case .diagnosticReport: + return FHIRResourceCategory.diagnostic + case .documentManifest: + return FHIRResourceCategory.other + case .documentReference: + return FHIRResourceCategory.other + case .domainResource: + return FHIRResourceCategory.other + case .eligibilityRequest: + return FHIRResourceCategory.other + case .eligibilityResponse: + return FHIRResourceCategory.other + case .encounter: + return FHIRResourceCategory.encounter + case .enrollmentRequest: + return FHIRResourceCategory.other + case .enrollmentResponse: + return FHIRResourceCategory.other + case .episodeOfCare: + return FHIRResourceCategory.other + case .explanationOfBenefit: + return FHIRResourceCategory.other + case .familyMemberHistory: + return FHIRResourceCategory.other + case .flag: + return FHIRResourceCategory.other + case .goal: + return FHIRResourceCategory.other + case .group: + return FHIRResourceCategory.other + case .healthcareService: + return FHIRResourceCategory.other + case .imagingObjectSelection: + return FHIRResourceCategory.other + case .imagingStudy: + return FHIRResourceCategory.other + case .immunization: + return FHIRResourceCategory.immunization + case .immunizationRecommendation: + return FHIRResourceCategory.immunization + case .implementationGuide: + return FHIRResourceCategory.other + case .list: + return FHIRResourceCategory.other + case .location: + return FHIRResourceCategory.other + case .media: + return FHIRResourceCategory.other + case .medication: + return FHIRResourceCategory.medication + case .medicationAdministration: + return FHIRResourceCategory.medication + case .medicationDispense: + return FHIRResourceCategory.medication + case .medicationOrder: + return FHIRResourceCategory.medication + case .medicationStatement: + return FHIRResourceCategory.medication + case .messageHeader: + return FHIRResourceCategory.other + case .namingSystem: + return FHIRResourceCategory.other + case .nutritionOrder: + return FHIRResourceCategory.other + case .observation: + return FHIRResourceCategory.observation + case .operationDefinition: + return FHIRResourceCategory.other + case .operationOutcome: + return FHIRResourceCategory.other + case .order: + return FHIRResourceCategory.other + case .orderResponse: + return FHIRResourceCategory.other + case .organization: + return FHIRResourceCategory.other + case .parameters: + return FHIRResourceCategory.other + case .patient: + return FHIRResourceCategory.other + case .paymentNotice: + return FHIRResourceCategory.other + case .paymentReconciliation: + return FHIRResourceCategory.other + case .person: + return FHIRResourceCategory.other + case .practitioner: + return FHIRResourceCategory.other + case .procedure: + return FHIRResourceCategory.procedure + case .procedureRequest: + return FHIRResourceCategory.procedure + case .processRequest: + return FHIRResourceCategory.other + case .processResponse: + return FHIRResourceCategory.other + case .provenance: + return FHIRResourceCategory.other + case .questionnaire: + return FHIRResourceCategory.other + case .questionnaireResponse: + return FHIRResourceCategory.other + case .referralRequest: + return FHIRResourceCategory.other + case .relatedPerson: + return FHIRResourceCategory.other + case .resource: + return FHIRResourceCategory.other + case .riskAssessment: + return FHIRResourceCategory.other + case .schedule: + return FHIRResourceCategory.other + case .searchParameter: + return FHIRResourceCategory.other + case .slot: + return FHIRResourceCategory.other + case .specimen: + return FHIRResourceCategory.other + case .structureDefinition: + return FHIRResourceCategory.other + case .subscription: + return FHIRResourceCategory.other + case .substance: + return FHIRResourceCategory.other + case .supplyDelivery: + return FHIRResourceCategory.other + case .supplyRequest: + return FHIRResourceCategory.other + case .testScript: + return FHIRResourceCategory.other + case .valueSet: + return FHIRResourceCategory.other + case .visionPrescription: + return FHIRResourceCategory.other + case .unrecognized: + return FHIRResourceCategory.other + } + } + } +} diff --git a/Sources/SpeziFHIR/FHIRResource/FHIRResource+Search.swift b/Sources/SpeziFHIR/FHIRResource/FHIRResource+Search.swift new file mode 100644 index 0000000..b14e709 --- /dev/null +++ b/Sources/SpeziFHIR/FHIRResource/FHIRResource+Search.swift @@ -0,0 +1,33 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + + +extension FHIRResource { + func matchesDisplayName(with searchText: String) -> Bool { + let formattedSearchText = searchText + .trimmingCharacters(in: .whitespacesAndNewlines) + .lowercased() + return displayName.lowercased().contains(formattedSearchText) + } +} + + +extension Array where Element == FHIRResource { + /// Filters the FHIR resources using the provided search text. + /// - Parameter searchText: Filters the FHIR resources using the provided search text. + /// - Returns: The filtered FHIR resources. + public func filterByDisplayName(with searchText: String) -> [FHIRResource] { + if searchText.isEmpty { + return self + } + + return filter { resource in + resource.matchesDisplayName(with: searchText) + } + } +} diff --git a/Sources/SpeziFHIR/FHIRResource/FHIRResource.swift b/Sources/SpeziFHIR/FHIRResource/FHIRResource.swift new file mode 100644 index 0000000..ddf2873 --- /dev/null +++ b/Sources/SpeziFHIR/FHIRResource/FHIRResource.swift @@ -0,0 +1,153 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Foundation +@preconcurrency import ModelsDSTU2 +@preconcurrency import ModelsR4 + + +/// Represents a FHIR (Fast Healthcare Interoperability Resources) entity. +/// +/// Handles both DSTU2 and R4 versions, providing a unified interface to interact with different FHIR versions. +public struct FHIRResource: Sendable, Identifiable, Hashable { + /// Version-specific FHIR resources. + public enum VersionedFHIRResource: Sendable, Hashable { + /// R4 version of FHIR resources. + case r4(ModelsR4.Resource) // swiftlint:disable:this identifier_name + // DSTU2 version of FHIR resources. + case dstu2(ModelsDSTU2.Resource) + } + + + /// The version-specific FHIR resource. + public let versionedResource: VersionedFHIRResource + /// Human-readable name or description of the resource. + public let displayName: String + + + /// Unique identifier for the FHIR resource. + public var id: String { + switch versionedResource { + case let .r4(resource): + guard let id = resource.id?.value?.string else { + preconditionFailure( + "A stable identifier must be present when wrapping content in a FHIRResource. The identifier might have been changed." + ) + } + return id + case let .dstu2(resource): + guard let id = resource.id?.value?.string else { + preconditionFailure( + "A stable identifier must be present when wrapping content in a FHIRResource. The identifier might have been changed." + ) + } + return id + } + } + + /// The date associated with the FHIR resource, if available. This could represent different dates depending on the resource type, like issued date for observations. + public var date: Date? { + switch versionedResource { + case let .r4(resource): + switch resource { + case let observation as ModelsR4.Observation: + return try? observation.issued?.value?.asNSDate() + default: + return nil + } + case let .dstu2(resource): + switch resource { + case let observation as ModelsDSTU2.Observation: + return try? observation.issued?.value?.asNSDate() + case let medicationOrder as ModelsDSTU2.MedicationOrder: + return try? medicationOrder.dateWritten?.value?.asNSDate() + case let condition as ModelsDSTU2.MedicationOrder: + return try? condition.dateWritten?.value?.asNSDate() + case let procedure as ModelsDSTU2.Procedure: + guard case let .dateTime(date) = procedure.performed else { + return nil + } + return try? date.value?.asNSDate() + default: + return nil + } + } + } + + /// The type of the FHIR resource represented as a string. It provides an easy way to identify the kind of FHIR entity (e.g., Observation, MedicationOrder). + public var resourceType: String { + switch versionedResource { + case let .r4(resource): + return ResourceProxy(with: resource).resourceType + case let .dstu2(resource): + return ResourceProxy(with: resource).resourceType + } + } + + /// JSON representation of the FHIR resource with specified formatting. Useful for serialization and debugging. + public var jsonDescription: String { + json(withConfiguration: [.prettyPrinted, .sortedKeys, .withoutEscapingSlashes]) + } + + + /// Initializes a `FHIRResource` with a versioned FHIR resource and a display name. + /// - Parameters: + /// - versionedResource: The specific version (DSTU2 or R4) of the FHIR resource. + /// - displayName: A user-friendly name for the resource. + public init(versionedResource: VersionedFHIRResource, displayName: String) { + // We fail in debug builds to inform developers about the need to define identifier. + // We fallback to generating unique ids in production builds. + switch versionedResource { + case let .r4(resource): + if resource.id?.value?.string == nil { + assertionFailure("Could not find a stable identifier for the resources. Be sure that your resouces as the `id` field set.") + resource.id = FHIRPrimitive(stringLiteral: UUID().uuidString) + } + case let .dstu2(resource): + if resource.id?.value?.string == nil { + assertionFailure("Could not find a stable identifier for the resources. Be sure that your resouces as the `id` field set.") + resource.id = FHIRPrimitive(stringLiteral: UUID().uuidString) + } + } + + self.versionedResource = versionedResource + self.displayName = displayName + } + + /// Convenience initializer for R4 version of FHIR resources. + /// - Parameters: + /// - resource: An R4 FHIR resource. + /// - displayName: A user-friendly name for the resource. + public init(resource: ModelsR4.Resource, displayName: String) { + self.init(versionedResource: .r4(resource), displayName: displayName) + } + + /// Convenience initializer for DSTU2 version of FHIR resources. + /// - Parameters: + /// - resource: A DSTU2 FHIR resource. + /// - displayName: A user-friendly name for the resource. + public init(resource: ModelsDSTU2.Resource, displayName: String) { + self.init(versionedResource: .dstu2(resource), displayName: displayName) + } + + + /// Generates a JSON string representation of the resource with specified formatting options. + /// - Parameter outputFormatting: JSON encoding options such as pretty printing. + /// - Returns: A JSON string representing the resource. + public func json(withConfiguration outputFormatting: JSONEncoder.OutputFormatting) -> String { + let encoder = JSONEncoder() + encoder.outputFormatting = outputFormatting + + switch versionedResource { + case let .r4(resource): + return (try? String(decoding: encoder.encode(resource), as: UTF8.self)) ?? "{}" + case let .dstu2(resource): + return (try? String(decoding: encoder.encode(resource), as: UTF8.self)) ?? "{}" + } + } +} diff --git a/Sources/SpeziFHIR/FHIRStore.swift b/Sources/SpeziFHIR/FHIRStore.swift new file mode 100644 index 0000000..1eb135a --- /dev/null +++ b/Sources/SpeziFHIR/FHIRStore.swift @@ -0,0 +1,137 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Combine +import Observation +import class ModelsR4.Bundle +import enum ModelsDSTU2.ResourceProxy + + +/// Manage FHIR resources grouped into automatically computed and updated categories. +@Observable +public class FHIRStore { + @ObservationIgnored private var _resources: [FHIRResource] + + + /// Allergy intolerances. + public var allergyIntolerances: [FHIRResource] { + access(keyPath: \.allergyIntolerances) + return _resources.filter { $0.category == .allergyIntolerance } + } + + /// Conditions. + public var conditions: [FHIRResource] { + access(keyPath: \.conditions) + return _resources.filter { $0.category == .condition } + } + + /// Diagnostics. + public var diagnostics: [FHIRResource] { + access(keyPath: \.diagnostics) + return _resources.filter { $0.category == .diagnostic } + } + + /// Encounters. + public var encounters: [FHIRResource] { + access(keyPath: \.encounters) + return _resources.filter { $0.category == .encounter } + } + + /// Immunizations. + public var immunizations: [FHIRResource] { + access(keyPath: \.immunizations) + return _resources.filter { $0.category == .immunization } + } + + /// Medications. + public var medications: [FHIRResource] { + access(keyPath: \.medications) + return _resources.filter { $0.category == .medication } + } + + /// Observations. + public var observations: [FHIRResource] { + access(keyPath: \.observations) + return _resources.filter { $0.category == .observation } + } + + /// Other resources that could not be classified on the other categories. + public var otherResources: [FHIRResource] { + access(keyPath: \.otherResources) + return _resources.filter { $0.category == .other } + } + + /// Procedures. + public var procedures: [FHIRResource] { + access(keyPath: \.procedures) + return _resources.filter { $0.category == .procedure } + } + + + init() { + self._resources = [] + } + + + /// Inserts a FHIR resource into the store. + /// + /// - Parameter resource: The `FHIRResource` to be inserted. + public func insert(resource: FHIRResource) { + withMutation(keyPath: resource.storeKeyPath) { + _resources.append(resource) + } + } + + /// Removes a FHIR resource from the store. + /// + /// - Parameter resource: The `FHIRResource` identifier to be inserted. + public func remove(resource resourceId: FHIRResource.ID) { + guard let resource = _resources.first(where: { $0.id == resourceId }) else { + return + } + + withMutation(keyPath: resource.storeKeyPath) { + _resources.removeAll(where: { $0.id == resourceId }) + } + } + + /// Loads resources from a given FHIR `Bundle`. + /// + /// - Parameter bundle: The FHIR `Bundle` containing resources to be loaded. + public func load(bundle: Bundle) { + let resourceProxies = bundle.entry?.compactMap { $0.resource } ?? [] + + for resourceProxy in resourceProxies { + insert(resource: FHIRResource(resource: resourceProxy.get(), displayName: resourceProxy.resourceType)) + } + } + + /// Removes all resources from the store. + public func removeAllResources() { + // Not really ideal but seems to be a path to ensure that all observables are called. + _$observationRegistrar.willSet(self, keyPath: \.allergyIntolerances) + _$observationRegistrar.willSet(self, keyPath: \.conditions) + _$observationRegistrar.willSet(self, keyPath: \.diagnostics) + _$observationRegistrar.willSet(self, keyPath: \.encounters) + _$observationRegistrar.willSet(self, keyPath: \.immunizations) + _$observationRegistrar.willSet(self, keyPath: \.medications) + _$observationRegistrar.willSet(self, keyPath: \.observations) + _$observationRegistrar.willSet(self, keyPath: \.otherResources) + _$observationRegistrar.willSet(self, keyPath: \.procedures) + _resources = [] + _$observationRegistrar.didSet(self, keyPath: \.allergyIntolerances) + _$observationRegistrar.didSet(self, keyPath: \.conditions) + _$observationRegistrar.didSet(self, keyPath: \.diagnostics) + _$observationRegistrar.didSet(self, keyPath: \.encounters) + _$observationRegistrar.didSet(self, keyPath: \.immunizations) + _$observationRegistrar.didSet(self, keyPath: \.medications) + _$observationRegistrar.didSet(self, keyPath: \.observations) + _$observationRegistrar.didSet(self, keyPath: \.otherResources) + _$observationRegistrar.didSet(self, keyPath: \.procedures) + } +} diff --git a/Sources/SpeziFHIRHealthKit/FHIR+HealthKit.swift b/Sources/SpeziFHIRHealthKit/FHIR+HealthKit.swift new file mode 100644 index 0000000..db1c2d6 --- /dev/null +++ b/Sources/SpeziFHIRHealthKit/FHIR+HealthKit.swift @@ -0,0 +1,78 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import HealthKit +import HealthKitOnFHIR +import ModelsDSTU2 +import ModelsR4 +import SpeziFHIR +import SpeziHealthKit + + +extension FHIR: HealthKitConstraint { + private static let hkHealthStore: HKHealthStore? = { + guard HKHealthStore.isHealthDataAvailable() else { + return nil + } + + return HKHealthStore() + }() + + + public func add(sample: HKSample) async { + do { + let resource = try await transform(sample: sample) + store.insert(resource: resource) + } catch { + print("Could not transform HKSample: \(error)") + } + } + + public func remove(sample: HKDeletedObject) async { + store.remove(resource: sample.uuid.uuidString) + } + + + private func transform(sample: HKSample) async throws -> FHIRResource { + switch sample { + case let clinicalResource as HKClinicalRecord where clinicalResource.fhirResource?.fhirVersion == .primaryDSTU2(): + guard let fhirResource = clinicalResource.fhirResource else { + throw HealthKitOnFHIRError.invalidFHIRResource + } + + let decoder = JSONDecoder() + let resourceProxy = try decoder.decode(ModelsDSTU2.ResourceProxy.self, from: fhirResource.data) + return FHIRResource( + versionedResource: .dstu2(resourceProxy.get()), + displayName: clinicalResource.displayName + ) + case let electrocardiogram as HKElectrocardiogram: + guard let hkHealthStore = FHIR.hkHealthStore else { + fallthrough + } + + async let symptoms = try electrocardiogram.symptoms(from: hkHealthStore) + async let voltageMeasurements = try electrocardiogram.voltageMeasurements(from: hkHealthStore) + + let electrocardiogramResource = try await electrocardiogram.observation( + symptoms: symptoms, + voltageMeasurements: voltageMeasurements + ) + return FHIRResource( + versionedResource: .r4(electrocardiogramResource), + displayName: String(localized: "FHIR_RESOURCES_SUMMARY_ID_TITLE \(electrocardiogramResource.id?.value?.string ?? "-")") + ) + default: + let genericResource = try sample.resource.get() + return FHIRResource( + versionedResource: .r4(genericResource), + displayName: String(localized: "FHIR_RESOURCES_SUMMARY_ID_TITLE \(genericResource.id?.value?.string ?? "-")") + ) + } + } +} diff --git a/Sources/SpeziFHIRInterpretation/FHIRResourceInterpreter.swift b/Sources/SpeziFHIRInterpretation/FHIRResourceInterpreter.swift new file mode 100644 index 0000000..2d5da8d --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/FHIRResourceInterpreter.swift @@ -0,0 +1,67 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Foundation +import Observation +import SpeziFHIR +import SpeziLocalStorage +import SpeziOpenAI + + +/// Responsible for interpreting FHIR resources. +@Observable +public class FHIRResourceInterpreter { + private let resourceProcesser: FHIRResourceProcesser + + + /// - Parameters: + /// - localStorage: Local storage module that needs to be passed to the ``FHIRResourceInterpreter`` to allow it to cache interpretations. + /// - openAIModel: OpenAI module that needs to be passed to the ``FHIRResourceInterpreter`` to allow it to retrieve interpretations. + public init(localStorage: LocalStorage, openAIModel: OpenAIModel) { + self.resourceProcesser = FHIRResourceProcesser( + localStorage: localStorage, + openAIModel: openAIModel, + storageKey: "FHIRResourceInterpreter.Interpretations", + prompt: FHIRPrompt.interpretation + ) + } + + + /// Interprets a given FHIR resource. Returns a human-readable interpretation. + /// + /// - Parameters: + /// - resource: The `FHIRResource` to be interpreted. + /// - forceReload: A boolean value that indicates whether to reload and reprocess the resource. + /// - Returns: An asynchronous `String` representing the interpretation of the resource. + @discardableResult + public func summarize(resource: FHIRResource, forceReload: Bool = false) async throws -> String { + try await resourceProcesser.process(resource: resource, forceReload: forceReload) + } +} + + +extension FHIRPrompt { + /// Prompt used to interpret FHIR resources + /// + /// This prompt is used by the ``FHIRResourceInterpreter``. + public static let interpretation: FHIRPrompt = { + FHIRPrompt( + storageKey: "prompt.interpretation", + localizedDescription: String( + localized: "Interpretation Prompt", + bundle: .module, + comment: "Title of the interpretation prompt." + ), + defaultPrompt: String( + localized: "Interpretation Prompt Content", + bundle: .module, + comment: "Content of the interpretation prompt." + ) + ) + }() +} diff --git a/Sources/SpeziFHIRInterpretation/FHIRResourceProcesser.swift b/Sources/SpeziFHIRInterpretation/FHIRResourceProcesser.swift new file mode 100644 index 0000000..74ab2c7 --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/FHIRResourceProcesser.swift @@ -0,0 +1,76 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Observation +import SpeziFHIR +import SpeziLocalStorage +import SpeziOpenAI + + +@Observable +class FHIRResourceProcesser { + typealias Results = [FHIRResource.ID: String] + + + private let localStorage: LocalStorage + private let openAIModel: OpenAIModel + private let storageKey: String + private let prompt: FHIRPrompt + + + var results: Results = [:] { + didSet { + do { + try localStorage.store(results, storageKey: storageKey) + } catch { + print(error) + } + } + } + + + init( + localStorage: LocalStorage, + openAIModel: OpenAIModel, + storageKey: String, + prompt: FHIRPrompt + ) { + self.localStorage = localStorage + self.openAIModel = openAIModel + self.storageKey = storageKey + self.prompt = prompt + self.results = (try? localStorage.read(storageKey: storageKey)) ?? [:] + } + + + @discardableResult + func process(resource: FHIRResource, forceReload: Bool = false) async throws -> String { + if let result = results[resource.id], !result.isEmpty, !forceReload { + return result + } + + let chatStreamResults = try await openAIModel.queryAPI(withChat: [systemPrompt(forResource: resource)]) + var result = "" + + for try await chatStreamResult in chatStreamResults { + for choice in chatStreamResult.choices { + result.append(choice.delta.content ?? "") + } + } + + results[resource.id] = result + return result + } + + private func systemPrompt(forResource resource: FHIRResource) -> Chat { + Chat( + role: .system, + content: prompt.prompt(withFHIRResource: resource.jsonDescription) + ) + } +} diff --git a/Sources/SpeziFHIRInterpretation/FHIRResourceSummary.swift b/Sources/SpeziFHIRInterpretation/FHIRResourceSummary.swift new file mode 100644 index 0000000..4aca079 --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/FHIRResourceSummary.swift @@ -0,0 +1,67 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Foundation +import Observation +import SpeziFHIR +import SpeziLocalStorage +import SpeziOpenAI + + +/// Responsible for summarizing FHIR resources. +@Observable +public class FHIRResourceSummary { + private let resourceProcesser: FHIRResourceProcesser + + + /// - Parameters: + /// - localStorage: Local storage module that needs to be passed to the ``FHIRResourceSummary`` to allow it to cache summaries. + /// - openAIModel: OpenAI module that needs to be passed to the ``FHIRResourceSummary`` to allow it to retrieve summaries. + public init(localStorage: LocalStorage, openAIModel: OpenAIModel) { + self.resourceProcesser = FHIRResourceProcesser( + localStorage: localStorage, + openAIModel: openAIModel, + storageKey: "FHIRResourceSummary.Summaries", + prompt: FHIRPrompt.summary + ) + } + + + /// Summarizes a given FHIR resource. Returns a human-readable summary. + /// + /// - Parameters: + /// - resource: The `FHIRResource` to be summarized. + /// - forceReload: A boolean value that indicates whether to reload and reprocess the resource. + /// - Returns: An asynchronous `String` representing the summarization of the resource. + @discardableResult + public func summarize(resource: FHIRResource, forceReload: Bool = false) async throws -> String { + try await resourceProcesser.process(resource: resource, forceReload: forceReload) + } +} + + +extension FHIRPrompt { + /// Prompt used to summarize FHIR resources + /// + /// This prompt is used by the ``FHIRResourceSummary``. + public static let summary: FHIRPrompt = { + FHIRPrompt( + storageKey: "prompt.summary", + localizedDescription: String( + localized: "Summary Prompt", + bundle: .module, + comment: "Title of the summary prompt." + ), + defaultPrompt: String( + localized: "Summary Prompt Content", + bundle: .module, + comment: "Content of the summary prompt." + ) + ) + }() +} diff --git a/Sources/SpeziFHIRInterpretation/FHIRResourceSummaryView.swift b/Sources/SpeziFHIRInterpretation/FHIRResourceSummaryView.swift new file mode 100644 index 0000000..6576045 --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/FHIRResourceSummaryView.swift @@ -0,0 +1,56 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import SpeziFHIR +import SpeziViews +import SwiftUI + + +/// Displays a FHIR resource, a summary if loaded, and provides a mechanism to load a summary using a context menu. +public struct FHIRResourceSummaryView: View { + @Environment(FHIRResourceSummary.self) private var fhirResourceSummary + @State private var summary: String? + @State private var viewState: ViewState = .idle + + private let resource: FHIRResource + + + public var body: some View { + if let summary, !summary.isEmpty { + VStack(alignment: .leading, spacing: 4) { + Text(resource.displayName) + Text(summary) + .font(.caption) + } + .multilineTextAlignment(.leading) + } else { + VStack(alignment: .leading, spacing: 4) { + Text(resource.displayName) + if viewState == .processing { + ProgressView() + .progressViewStyle(.circular) + .padding(.vertical, 6) + } + } + .contextMenu { + Button("Load Resource Summary") { + Task { + viewState = .processing + summary = try? await fhirResourceSummary.summarize(resource: resource) + viewState = .idle + } + } + } + } + } + + + public init(resource: FHIRResource) { + self.resource = resource + } +} diff --git a/Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings b/Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings new file mode 100644 index 0000000..5d22190 --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings @@ -0,0 +1,90 @@ +{ + "sourceLanguage" : "en", + "strings" : { + "Customize the %@." : { + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Customize the %@." + } + } + } + }, + "Interpretation Prompt" : { + "comment" : "Title of the interpretation prompt.", + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Interpretation Prompt" + } + } + } + }, + "Interpretation Prompt Content" : { + "comment" : "Content of the interpretation prompt.", + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Your task is to interpret the following FHIR resource from the user's clinical record.\n\nInterpret the resource by explaining its data relevant to the user's health.\nExplain the relevant medical context in a language understandable by a user who is not a medical professional.\nYou should provide factual and precise information in a compact summary in short responses.\n\nThe following JSON representation defines the FHIR resource that you should interpret:\n{{FHIR_RESOURCE}}\n\nImmediately return an interpretation to the user, starting the conversation.\nDo not introduce yourself at the beginning, and start with your interpretation.\n\nChat with the user in the same language they chat in.\nChat with the user in {{LOCALE}}" + } + } + } + }, + "Load Resource Summary" : { + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Load Resource Summary" + } + } + } + }, + "Place %@ at the position in the prompt where the FHIR resource should be inserted. Optionally place %@ where you would like to insert the current locale." : { + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "new", + "value" : "Place %1$@ at the position in the prompt where the FHIR resource should be inserted. Optionally place %2$@ where you would like to insert the current locale." + } + } + } + }, + "Save Prompt" : { + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Save Prompt" + } + } + } + }, + "Summary Prompt" : { + "comment" : "Title of the summary prompt.", + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Summary Prompt" + } + } + } + }, + "Summary Prompt Content" : { + "comment" : "Content of the summary prompt.", + "localizations" : { + "en" : { + "stringUnit" : { + "state" : "translated", + "value" : "Your task is to interpret FHIR resources from the user's clinical records.\nThroughout the conversation with the user, use the get_resource_titles function to obtain the FHIR health resources necessary to properly answer the users question. For example, if the user asks about their allergies, you must use get_resource_titles to output the FHIR resource titles for allergy records so you can then use them to answer the question. The output of get_resource_titles has to be the name of a resource or resources with the exact same title as in the list provided.\n\nAnswer the users question, the health record provided is not always related. The end goal is to answer the users question in the best way possible.\n\nInterpret the resources by explaining its data relevant to the user's health.\nExplain the relevant medical context in a language understandable by a user who is not a medical professional.\nYou should provide factual and precise information in a compact summary in short responses.\n\nTell the user that they can ask any question about their health records and then create a short summary of the main categories of health records of the user which you have access to. These are the resource titles:\n{{FHIR_RESOURCE}}\n\nImmediately return a short summary of the users health records to start the conversation.\nThe initial summary should be a short and simple summary with the following specifications:\n1. Short summary of the health records categories\n2. 5th grade reading level\n3. End with a question asking user if they have any questions. Make sure that this question is not generic but specific to their health records.\nDo not introduce yourself at the beginning, and start with your interpretation.\nMake sure your response is in the same language the user writes to you in.\nThe tense should be present. \n\nChat with the user in the same language they chat in.\nChat with the user in {{LOCALE}}" + } + } + } + } + }, + "version" : "1.0" +} \ No newline at end of file diff --git a/Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings.license b/Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings.license new file mode 100644 index 0000000..9bfad3b --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/Resources/Localizable.xcstrings.license @@ -0,0 +1,5 @@ +This source file is part of the Stanford Spezi open-source project + +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) + +SPDX-License-Identifier: MIT diff --git a/Sources/SpeziFHIRInterpretation/Settings/FHIRPrompt.swift b/Sources/SpeziFHIRInterpretation/Settings/FHIRPrompt.swift new file mode 100644 index 0000000..64ffb1d --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/Settings/FHIRPrompt.swift @@ -0,0 +1,69 @@ +// +// This source file is part of the Stanford LLM on FHIR project +// +// SPDX-FileCopyrightText: 2023 Stanford University +// +// SPDX-License-Identifier: MIT +// + +import Foundation + + +/// Handle dynamic, localized LLM prompts for FHIR resources. +public struct FHIRPrompt: Hashable { + /// Placeholder for FHIR resource in prompts. + public static let fhirResourcePlaceholder = "{{FHIR_RESOURCE}}" + /// Placeholder for the current locale in a prompt + public static let localePlaceholder = "{{LOCALE}}" + + /// The key used for storing and retrieving the prompt. + public let storageKey: String + /// A human-readable description of the prompt, localized as needed. + public let localizedDescription: String + /// The default prompt text to be used if no custom prompt is set. + public let defaultPrompt: String + + /// The current prompt, either from UserDefaults or the default, appended with a localized message that adapts to the user's language settings. + public var prompt: String { + UserDefaults.standard.string(forKey: storageKey) ?? defaultPrompt + } + + + /// - Parameters: + /// - storageKey: The key used for storing and retrieving the prompt. + /// - localizedDescription: A human-readable description of the prompt, localized as needed. + /// - defaultPrompt: The default prompt text to be used if no custom prompt is set. + public init( + storageKey: String, + localizedDescription: String, + defaultPrompt: String + ) { + self.storageKey = storageKey + self.localizedDescription = localizedDescription + self.defaultPrompt = defaultPrompt + } + + + /// Saves a new version of the propmpt. + /// - Parameter prompt: The new prompt. + public func save(prompt: String) { + UserDefaults.standard.set(prompt, forKey: storageKey) + } + + public func hash(into hasher: inout Hasher) { + hasher.combine(storageKey) + } + + /// Creates a prompt based in the variable input. + /// + /// Use ``FHIRPrompt/fhirResourcePlaceholder`` and ``FHIRPrompt/localePlaceholder`` to define the elements that should be replaced. + /// - Parameters: + /// - resource: The resource that should be inserted in the prompt. + /// - locale: The current locale that should be inserted in the prompt. + /// - Returns: The constructed prompt. + public func prompt(withFHIRResource resource: String, locale: String = Locale.preferredLanguages[0]) -> String { + prompt + .replacingOccurrences(of: FHIRPrompt.fhirResourcePlaceholder, with: resource) + .replacingOccurrences(of: FHIRPrompt.localePlaceholder, with: locale) + } +} diff --git a/Sources/SpeziFHIRInterpretation/Settings/FHIRPromptSettingsView.swift b/Sources/SpeziFHIRInterpretation/Settings/FHIRPromptSettingsView.swift new file mode 100644 index 0000000..ef23542 --- /dev/null +++ b/Sources/SpeziFHIRInterpretation/Settings/FHIRPromptSettingsView.swift @@ -0,0 +1,56 @@ +// +// This source file is part of the Stanford LLM on FHIR project +// +// SPDX-FileCopyrightText: 2023 Stanford University +// +// SPDX-License-Identifier: MIT +// + +import SwiftUI + + +/// Customize LLM ``FHIRPrompt``s. +/// +/// Allows users to edit and save a prompt associated with a specific ``FHIRPrompt`` type, including where to insert FHIR resources dynamically in the prompt. +public struct PromptSettingsView: View { + private let promptType: FHIRPrompt + private let onSave: () -> Void + @State private var prompt: String = "" + + + public var body: some View { + VStack(spacing: 16) { + Text("Customize the \(promptType.localizedDescription.lowercased()).") + .multilineTextAlignment(.leading) + TextEditor(text: $prompt) + .fontDesign(.monospaced) + Text("Place \(FHIRPrompt.fhirResourcePlaceholder) at the position in the prompt where the FHIR resource should be inserted. Optionally place \(FHIRPrompt.localePlaceholder) where you would like to insert the current locale.") + .multilineTextAlignment(.leading) + .font(.caption) + Button( + action: { + promptType.save(prompt: prompt) + onSave() + }, + label: { + Text("Save Prompt") + .frame(maxWidth: .infinity, minHeight: 40) + } + ) + .buttonStyle(.borderedProminent) + } + .padding() + .navigationTitle(promptType.localizedDescription) + } + + + /// Initializes a new `PromptSettingsView` with the specified ``FHIRPrompt`` and a save action. + /// - Parameters: + /// - promptType: The ``FHIRPrompt`` instance whose settings are being modified. It holds the information about the specific prompt being edited. + /// - onSave: A closure to be called when the user saves the prompt. This allows for custom actions, like dismissing the view. + public init(promptType: FHIRPrompt, onSave: @escaping () -> Void) { + self.promptType = promptType + self.onSave = onSave + self._prompt = State(initialValue: promptType.prompt) + } +} diff --git a/Sources/SpeziFHIRMockPatients/FHIRBundle+MockPatients.swift b/Sources/SpeziFHIRMockPatients/FHIRBundle+MockPatients.swift new file mode 100644 index 0000000..44801d3 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/FHIRBundle+MockPatients.swift @@ -0,0 +1,90 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Foundation +import class ModelsR4.Bundle + + +extension ModelsR4.Bundle { + private static var _jamison785Denesik803: ModelsR4.Bundle? + /// Example FHIR resources packed into a bundle to represent the simulated patient named Jamison785 Denesik803. + public static var jamison785Denesik803: ModelsR4.Bundle { + get async { + if let jamison785Denesik803 = _jamison785Denesik803 { + return jamison785Denesik803 + } + + let jamison785Denesik803 = await Foundation.Bundle.module.loadFHIRBundle( + withName: "Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50" + ) + ModelsR4.Bundle._jamison785Denesik803 = jamison785Denesik803 + return jamison785Denesik803 + } + } + + private static var _maye976Dickinson688: ModelsR4.Bundle? + /// Example FHIR resources packed into a bundle to represent the simulated patient named Maye976 Dickinson688. + public static var maye976Dickinson688: ModelsR4.Bundle { + get async { + if let maye976Dickinson688 = _maye976Dickinson688 { + return maye976Dickinson688 + } + + let maye976Dickinson688 = await Foundation.Bundle.module.loadFHIRBundle( + withName: "Maye976_Dickinson688_04f25f73-04b2-469c-3806-540417a0d61c" + ) + ModelsR4.Bundle._maye976Dickinson688 = maye976Dickinson688 + return maye976Dickinson688 + } + } + + private static var _milagros256Hills818: ModelsR4.Bundle? + /// Example FHIR resources packed into a bundle to represent the simulated patient named Milagros256 Hills818. + public static var milagros256Hills818: ModelsR4.Bundle { + get async { + if let milagros256Hills818 = _milagros256Hills818 { + return milagros256Hills818 + } + + let milagros256Hills818 = await Foundation.Bundle.module.loadFHIRBundle( + withName: "Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012" + ) + ModelsR4.Bundle._milagros256Hills818 = milagros256Hills818 + return milagros256Hills818 + } + } + + private static var _napoleon578Fay398: ModelsR4.Bundle? + /// Example FHIR resources packed into a bundle to represent the simulated patient named Napoleon578 Fay398. + public static var napoleon578Fay398: ModelsR4.Bundle { + get async { + if let napoleon578Fay398 = _napoleon578Fay398 { + return napoleon578Fay398 + } + + let napoleon578Fay398 = await Foundation.Bundle.module.loadFHIRBundle( + withName: "Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf" + ) + ModelsR4.Bundle._napoleon578Fay398 = napoleon578Fay398 + return napoleon578Fay398 + } + } + + + /// Loads example FHIR resources packed into a bundle to represent the simulated patients. + public static var mockPatients: [Bundle] { + get async { + await [ + .jamison785Denesik803, + .maye976Dickinson688, + .milagros256Hills818, + .napoleon578Fay398 + ] + } + } +} diff --git a/Sources/SpeziFHIRMockPatients/FHIRBundle+Patient.swift b/Sources/SpeziFHIRMockPatients/FHIRBundle+Patient.swift new file mode 100644 index 0000000..60b5c54 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/FHIRBundle+Patient.swift @@ -0,0 +1,28 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import class ModelsR4.Bundle +import class ModelsR4.Patient + + +extension ModelsR4.Bundle { + var patient: Patient? { + entry?.compactMap { $0.resource?.get(if: ModelsR4.Patient.self) }.first + } + + var patientName: String { + guard let patient = patient, + let name = patient.name?.first, + let givenName = name.given?.first?.value?.string, + let familyName = name.family?.value?.string else { + return String(localized: "Unknown Patient", bundle: .module) + } + + return givenName + " " + familyName + } +} diff --git a/Sources/SpeziFHIRMockPatients/FHIRBundleSelector.swift b/Sources/SpeziFHIRMockPatients/FHIRBundleSelector.swift new file mode 100644 index 0000000..8181238 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/FHIRBundleSelector.swift @@ -0,0 +1,82 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import class ModelsR4.Bundle +import class ModelsR4.Patient +import SpeziFHIR +import SwiftUI + + +/// Loads resources from a FHIR bundle from a provided set of bundles. +/// +/// The View assumes that the bundle contains a `ModelsR4.Patient` resource to identify the bundle and provide a human-readable name. +public struct FHIRBundleSelector: View { + private struct PatientIdentifiedBundle: Identifiable { + let id: String + let bundle: ModelsR4.Bundle + } + + + private let bundles: [PatientIdentifiedBundle] + + @Environment(FHIRStore.self) private var store + + private var selectedBundle: Binding { + Binding( + get: { + guard let patient = store.otherResources.compactMap({ resource -> ModelsR4.Patient? in + guard case let .r4(resource) = resource.versionedResource, let loadedPatient = resource as? Patient else { + return nil + } + return loadedPatient + }).first else { + return nil + } + + + guard let bundle = bundles.first(where: { patient.identifier == $0.bundle.patient?.identifier }) else { + return nil + } + + return bundle.id + }, + set: { newValue in + guard let newValue, let bundle = bundles.first(where: { $0.id == newValue })?.bundle else { + return + } + + store.removeAllResources() + store.load(bundle: bundle) + } + ) + } + + + public var body: some View { + Picker( + String(localized: "Select Mock Patient", bundle: .module), + selection: selectedBundle + ) { + ForEach(bundles) { bundle in + Text(bundle.bundle.patientName) + .tag(bundle.id as String?) + } + } + } + + + public init(bundles: [ModelsR4.Bundle]) { + self.bundles = bundles.compactMap { + guard let id = $0.patient?.identifier?.first?.value?.value?.string else { + return nil + } + + return PatientIdentifiedBundle(id: id, bundle: $0) + } + } +} diff --git a/Sources/SpeziFHIRMockPatients/FHIRMockBundleSelector.swift b/Sources/SpeziFHIRMockPatients/FHIRMockBundleSelector.swift new file mode 100644 index 0000000..5c2f7f4 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/FHIRMockBundleSelector.swift @@ -0,0 +1,40 @@ +// +// This source file is part of the Stanford Spezi open-source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +@preconcurrency import ModelsR4 +import SwiftUI + + +/// Loads resources from a FHIR bundle from a provided set of mock bundles defined as an extension on `ModelsR4.Bundle`. +/// +/// The View assumes that the bundle contains a `ModelsR4.Patient` resource to identify the bundle and provide a human-readable name. +public struct FHIRMockPatientSelection: View { + @State var bundles: [ModelsR4.Bundle] = [] + + + public var body: some View { + Group { + if bundles.isEmpty { + HStack { + Spacer() + ProgressView() + Spacer() + } + } else { + FHIRBundleSelector(bundles: bundles) + .pickerStyle(.inline) + } + } + .task { + self.bundles = await ModelsR4.Bundle.mockPatients + } + } + + + public init() { } +} diff --git a/Sources/SpeziFHIRMockPatients/FoundationBundle+LoadBundle.swift b/Sources/SpeziFHIRMockPatients/FoundationBundle+LoadBundle.swift new file mode 100644 index 0000000..5768279 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/FoundationBundle+LoadBundle.swift @@ -0,0 +1,33 @@ +// +// This source file is part of the Stanford Spezi open source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Foundation +import class ModelsR4.Bundle + + +extension Foundation.Bundle { + /// Loads a FHIR `Bundle` from a Foundation `Bundle`. + /// - Parameter name: Name of the JSON file in the Foundation `Bundle` + /// - Returns: The FHIR `Bundle` + public func loadFHIRBundle(withName name: String) async -> Bundle { + guard let resourceURL = self.url(forResource: name, withExtension: "json") else { + fatalError("Could not find the resource \"\(name)\".json in the SpeziFHIRMockPatients Resources folder.") + } + + let loadingTask = Task { + let resourceData = try Data(contentsOf: resourceURL) + return try JSONDecoder().decode(Bundle.self, from: resourceData) + } + + do { + return try await loadingTask.value + } catch { + fatalError("Could not decode the FHIR bundle named \"\(name).json\": \(error)") + } + } +} diff --git a/Sources/SpeziFHIRMockPatients/Resources/Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json b/Sources/SpeziFHIRMockPatients/Resources/Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json new file mode 100644 index 0000000..938f326 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/Resources/Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json @@ -0,0 +1,111574 @@ +{ + "resourceType": "Bundle", + "type": "transaction", + "entry": [ { + "fullUrl": "urn:uuid:1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50", + "resource": { + "resourceType": "Patient", + "id": "1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50", + "meta": { + "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] + }, + "text": { + "status": "generated", + "div": "
Generated by Synthea.Version identifier: master-branch-latest-7-gcc27279b\n . Person seed: 6340506058215381367 Population seed: 0
" + }, + "extension": [ { + "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-race", + "extension": [ { + "url": "ombCategory", + "valueCoding": { + "system": "urn:oid:2.16.840.1.113883.6.238", + "code": "2054-5", + "display": "Black or African American" + } + }, { + "url": "text", + "valueString": "Black or African American" + } ] + }, { + "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity", + "extension": [ { + "url": "ombCategory", + "valueCoding": { + "system": "urn:oid:2.16.840.1.113883.6.238", + "code": "2186-5", + "display": "Not Hispanic or Latino" + } + }, { + "url": "text", + "valueString": "Not Hispanic or Latino" + } ] + }, { + "url": "http://hl7.org/fhir/StructureDefinition/patient-mothersMaidenName", + "valueString": "Santana368 Vandervort697" + }, { + "url": "http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex", + "valueCode": "M" + }, { + "url": "http://hl7.org/fhir/StructureDefinition/patient-birthPlace", + 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  • Inpatient care plan (record artifact)

Care plan is meant to treat Chronic congestive heart failure (disorder).
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b/Sources/SpeziFHIRMockPatients/Resources/Jamison785_Denesik803_1e08cb3f-9e6a-b083-b6ee-0bb38f70ba50.json.license @@ -0,0 +1,11 @@ + +This source file is part of the Stanford Spezi open-source project + +The patient data part of the SyntheticMass 1K Sample Synthetic Patient Records, FHIR R4 dataset. +Data hosted within SyntheticMass has been generated by SyntheaTM, an open-source patient population simulation made available by The MITRE Corporation. +The data is free from cost, privacy, and security restrictions. It can be used without restriction for a variety of secondary uses in academia, research, industry, and government. + +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: Jason Walonoski, Mark Kramer, Joseph Nichols, Andre Quina, Chris Moesel, Dylan Hall, Carlton Duffett, Kudakwashe Dube, Thomas Gallagher, Scott McLachlan, Synthea: An approach, method, and software mechanism for generating synthetic patients and the synthetic electronic health care record, Journal of the American Medical Informatics Association, Volume 25, Issue 3, March 2018, Pages 230–238, https:doi.org/10.1093/jamia/ocx079 + +SPDX-License-Identifier: MIT diff --git a/Sources/SpeziFHIRMockPatients/Resources/Maye976_Dickinson688_04f25f73-04b2-469c-3806-540417a0d61c.json b/Sources/SpeziFHIRMockPatients/Resources/Maye976_Dickinson688_04f25f73-04b2-469c-3806-540417a0d61c.json new file mode 100644 index 0000000..809d81f --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/Resources/Maye976_Dickinson688_04f25f73-04b2-469c-3806-540417a0d61c.json @@ -0,0 +1,98859 @@ +{ + "resourceType": "Bundle", + "type": "transaction", + "entry": [ { + "fullUrl": "urn:uuid:04f25f73-04b2-469c-3806-540417a0d61c", + "resource": { + "resourceType": "Patient", + "id": "04f25f73-04b2-469c-3806-540417a0d61c", + "meta": { + "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] + }, + "text": { + "status": "generated", + "div": "
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"urn:uuid:25b0ad7c-f22a-2756-986f-4be3fb934752", + "resource": { + "resourceType": "CareTeam", + "id": "25b0ad7c-f22a-2756-986f-4be3fb934752", + "meta": { + "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-careteam" ] + }, + "status": "inactive", + "subject": { + "reference": "urn:uuid:04f25f73-04b2-469c-3806-540417a0d61c" + }, + "encounter": { + "reference": "urn:uuid:6cbb6961-2c45-e76a-7361-26593a7f7fe2" + }, + "period": { + "start": "2004-04-11T22:27:51-04:00", + "end": "2004-11-28T21:27:51-05:00" + }, + "participant": [ { + "role": [ { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "116154003", + "display": "Patient" + } ], + "text": "Patient" + } ], + "member": { + "reference": "urn:uuid:04f25f73-04b2-469c-3806-540417a0d61c", + "display": "Mrs. Maye976 Dickinson688" + } + }, { + "role": [ { + "coding": [ { + "system": "http://snomed.info/sct", + "code": "223366009", + "display": "Healthcare professional (occupation)" + } ], + "text": 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Care Plan for Routine antenatal care.
Activities:
  • Routine antenatal care
  • Routine antenatal care
  • Routine antenatal care

Care plan is meant to treat Normal pregnancy.
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been generated by SyntheaTM, an open-source patient population simulation made available by The MITRE Corporation. +The data is free from cost, privacy, and security restrictions. It can be used without restriction for a variety of secondary uses in academia, research, industry, and government. + +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: Jason Walonoski, Mark Kramer, Joseph Nichols, Andre Quina, Chris Moesel, Dylan Hall, Carlton Duffett, Kudakwashe Dube, Thomas Gallagher, Scott McLachlan, Synthea: An approach, method, and software mechanism for generating synthetic patients and the synthetic electronic health care record, Journal of the American Medical Informatics Association, Volume 25, Issue 3, March 2018, Pages 230–238, https:doi.org/10.1093/jamia/ocx079 + +SPDX-License-Identifier: MIT diff --git a/Sources/SpeziFHIRMockPatients/Resources/Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012.json b/Sources/SpeziFHIRMockPatients/Resources/Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012.json new file mode 100644 index 0000000..f963d29 --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/Resources/Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012.json @@ -0,0 +1,116218 @@ +{ + "resourceType": "Bundle", + "type": "transaction", + "entry": [ { + "fullUrl": "urn:uuid:79b1d90a-0eaf-be78-9bbf-91c638626012", + "resource": { + "resourceType": "Patient", + "id": "79b1d90a-0eaf-be78-9bbf-91c638626012", + "meta": { + "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] + }, + "text": { + "status": "generated", + "div": "
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b/Sources/SpeziFHIRMockPatients/Resources/Milagros256_Hills818_79b1d90a-0eaf-be78-9bbf-91c638626012.json.license @@ -0,0 +1,11 @@ + +This source file is part of the Stanford Spezi open-source project + +The patient data part of the SyntheticMass 1K Sample Synthetic Patient Records, FHIR R4 dataset. +Data hosted within SyntheticMass has been generated by SyntheaTM, an open-source patient population simulation made available by The MITRE Corporation. +The data is free from cost, privacy, and security restrictions. It can be used without restriction for a variety of secondary uses in academia, research, industry, and government. + +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: Jason Walonoski, Mark Kramer, Joseph Nichols, Andre Quina, Chris Moesel, Dylan Hall, Carlton Duffett, Kudakwashe Dube, Thomas Gallagher, Scott McLachlan, Synthea: An approach, method, and software mechanism for generating synthetic patients and the synthetic electronic health care record, Journal of the American Medical Informatics Association, Volume 25, Issue 3, March 2018, Pages 230–238, https:doi.org/10.1093/jamia/ocx079 + +SPDX-License-Identifier: MIT diff --git a/Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json b/Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json new file mode 100644 index 0000000..4e099df --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json @@ -0,0 +1,114642 @@ +{ + "resourceType": "Bundle", + "type": "transaction", + "entry": [ { + "fullUrl": "urn:uuid:38f38890-b80f-6542-51d4-882c7b37b0bf", + "resource": { + "resourceType": "Patient", + "id": "38f38890-b80f-6542-51d4-882c7b37b0bf", + "meta": { + "profile": [ "http://hl7.org/fhir/us/core/StructureDefinition/us-core-patient" ] + }, + "text": { + "status": "generated", + "div": "
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"urn:uuid:555e333f-024e-08d4-924e-062f81da6016" + }, { + "reference": "urn:uuid:36391722-332a-0599-0986-3dc3eb0f9759" + }, { + "reference": "urn:uuid:69e500a6-34d2-2ddf-70bc-d2b6ed960ef5" + } ], + "recorded": "2021-11-20T09:07:50.718-05:00", + "agent": [ { + "type": { + "coding": [ { + "system": "http://terminology.hl7.org/CodeSystem/provenance-participant-type", + "code": "author", + "display": "Author" + } ], + "text": "Author" + }, + "who": { + "reference": "Practitioner?identifier=http://hl7.org/fhir/sid/us-npi|9999999579", + "display": "Dr. Darrick836 Franecki195" + }, + "onBehalfOf": { + "reference": "Organization?identifier=https://github.com/synthetichealth/synthea|9dd6b488-2cc9-3383-a460-09a6523ce78c", + "display": "WESTON PRIMARY CARE, PC" + } + }, { + "type": { + "coding": [ { + "system": "http://hl7.org/fhir/us/core/CodeSystem/us-core-provenance-participant-type", + "code": "transmitter", + "display": "Transmitter" + } ], + "text": "Transmitter" + }, + "who": { + "reference": "Practitioner?identifier=http://hl7.org/fhir/sid/us-npi|9999999579", + "display": "Dr. Darrick836 Franecki195" + }, + "onBehalfOf": { + "reference": "Organization?identifier=https://github.com/synthetichealth/synthea|9dd6b488-2cc9-3383-a460-09a6523ce78c", + "display": "WESTON PRIMARY CARE, PC" + } + } ] + }, + "request": { + "method": "POST", + "url": "Provenance" + } + } ] +} diff --git a/Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json.license b/Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json.license new file mode 100644 index 0000000..cb40f8b --- /dev/null +++ b/Sources/SpeziFHIRMockPatients/Resources/Napoleon578_Fay398_38f38890-b80f-6542-51d4-882c7b37b0bf.json.license @@ -0,0 +1,11 @@ + +This source file is part of the Stanford Spezi open-source project + +The patient data part of the SyntheticMass 1K Sample Synthetic Patient Records, FHIR R4 dataset. +Data hosted within SyntheticMass has been generated by SyntheaTM, an open-source patient population simulation made available by The MITRE Corporation. +The data is free from cost, privacy, and security restrictions. It can be used without restriction for a variety of secondary uses in academia, research, industry, and government. + +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: Jason Walonoski, Mark Kramer, Joseph Nichols, Andre Quina, Chris Moesel, Dylan Hall, Carlton Duffett, Kudakwashe Dube, Thomas Gallagher, Scott McLachlan, Synthea: An approach, method, and software mechanism for generating synthetic patients and the synthetic electronic health care record, Journal of the American Medical Informatics Association, Volume 25, Issue 3, March 2018, Pages 230–238, https:doi.org/10.1093/jamia/ocx079 + +SPDX-License-Identifier: MIT diff --git a/Tests/SpeziFHIRTests/SpeziFHIRTests.swift b/Tests/SpeziFHIRTests/SpeziFHIRTests.swift index 9d57069..d628e4e 100644 --- a/Tests/SpeziFHIRTests/SpeziFHIRTests.swift +++ b/Tests/SpeziFHIRTests/SpeziFHIRTests.swift @@ -1,7 +1,7 @@ // // This source file is part of the Stanford Spezi open-source project // -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) // // SPDX-License-Identifier: MIT // diff --git a/Tests/UITests/TestApp/Assets.xcassets/AccentColor.colorset/Contents.json.license b/Tests/UITests/TestApp/Assets.xcassets/AccentColor.colorset/Contents.json.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/TestApp/Assets.xcassets/AccentColor.colorset/Contents.json.license +++ b/Tests/UITests/TestApp/Assets.xcassets/AccentColor.colorset/Contents.json.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/TestApp/Assets.xcassets/AppIcon.appiconset/Contents.json.license b/Tests/UITests/TestApp/Assets.xcassets/AppIcon.appiconset/Contents.json.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/TestApp/Assets.xcassets/AppIcon.appiconset/Contents.json.license +++ b/Tests/UITests/TestApp/Assets.xcassets/AppIcon.appiconset/Contents.json.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/TestApp/Assets.xcassets/Contents.json.license b/Tests/UITests/TestApp/Assets.xcassets/Contents.json.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/TestApp/Assets.xcassets/Contents.json.license +++ b/Tests/UITests/TestApp/Assets.xcassets/Contents.json.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/TestApp/ContentView.swift b/Tests/UITests/TestApp/ContentView.swift new file mode 100644 index 0000000..97f8c92 --- /dev/null +++ b/Tests/UITests/TestApp/ContentView.swift @@ -0,0 +1,74 @@ +// +// This source file is part of the Stanford Spezi open-source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import SpeziFHIR +import SwiftUI + + +struct ContentView: View { + @Environment(FHIRStore.self) var fhirStore + @State var presentPatientSelection = false + @State var presentPromptSettings = false + + + var body: some View { + NavigationStack { + List { + Section { + Text("Allergy Intolerances: \(fhirStore.allergyIntolerances.count)") + Text("Conditions: \(fhirStore.conditions.count)") + Text("Diagnostics: \(fhirStore.diagnostics.count)") + Text("Encounters: \(fhirStore.encounters.count)") + Text("Immunizations: \(fhirStore.immunizations.count)") + Text("Medications: \(fhirStore.medications.count)") + Text("Observations: \(fhirStore.observations.count)") + Text("Other Resources: \(fhirStore.otherResources.count)") + Text("Procedures: \(fhirStore.procedures.count)") + } + Section { + presentPatientSelectionButton + } + } + .sheet(isPresented: $presentPatientSelection) { + MockPatientSelection(presentPatientSelection: $presentPatientSelection) + } + .sheet(isPresented: $presentPromptSettings) { + PromptSettings(presentPromptSettings: $presentPromptSettings) + } + .toolbar { + ToolbarItem { + presentPromptSettingsButton + } + } + } + } + + + @ViewBuilder private var presentPromptSettingsButton: some View { + Button( + action: { + presentPromptSettings.toggle() + }, + label: { + Image(systemName: "gear") + .accessibilityLabel(Text("Settings")) + } + ) + } + + @ViewBuilder private var presentPatientSelectionButton: some View { + Button( + action: { + presentPatientSelection.toggle() + }, + label: { + Text("Select Mock Patient") + } + ) + } +} diff --git a/Tests/UITests/TestApp/ExampleModule.swift b/Tests/UITests/TestApp/ExampleModule.swift new file mode 100644 index 0000000..8bb9171 --- /dev/null +++ b/Tests/UITests/TestApp/ExampleModule.swift @@ -0,0 +1,28 @@ +// +// This source file is part of the Stanford Spezi open-source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import Spezi +import SpeziFHIRInterpretation +import SpeziLocalStorage +import class SpeziOpenAI.OpenAIModule +import class SpeziOpenAI.OpenAIModel + + +class ExampleModule: Module { + @Dependency private var localStorage: LocalStorage + @Dependency private var openAI: OpenAIModule + + @Model private var resourceSummary: FHIRResourceSummary + @Model private var resourceInterpreter: FHIRResourceInterpreter + + + func configure() { + resourceSummary = FHIRResourceSummary(localStorage: localStorage, openAIModel: openAI.model) + resourceInterpreter = FHIRResourceInterpreter(localStorage: localStorage, openAIModel: openAI.model) + } +} diff --git a/Tests/UITests/TestApp/MockPatientSelection.swift b/Tests/UITests/TestApp/MockPatientSelection.swift new file mode 100644 index 0000000..1604874 --- /dev/null +++ b/Tests/UITests/TestApp/MockPatientSelection.swift @@ -0,0 +1,37 @@ +// +// This source file is part of the Stanford Spezi open-source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import SpeziFHIRMockPatients +import SwiftUI + + +struct MockPatientSelection: View { + @Binding var presentPatientSelection: Bool + + + var body: some View { + NavigationStack { + List { + FHIRMockPatientSelection() + } + .toolbar { + ToolbarItem { + Button( + action: { + presentPatientSelection.toggle() + }, + label: { + Text("Dismiss") + } + ) + } + } + .navigationTitle("Select Mock Patient") + } + } +} diff --git a/Tests/UITests/TestApp/PromptSettings.swift b/Tests/UITests/TestApp/PromptSettings.swift new file mode 100644 index 0000000..0cb616e --- /dev/null +++ b/Tests/UITests/TestApp/PromptSettings.swift @@ -0,0 +1,48 @@ +// +// This source file is part of the Stanford Spezi open-source project +// +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) +// +// SPDX-License-Identifier: MIT +// + +import SpeziFHIRInterpretation +import SwiftUI + + +struct PromptSettings: View { + @Binding var presentPromptSettings: Bool + @State var prompt: FHIRPrompt? + + + var body: some View { + NavigationStack { + List { + NavigationLink(value: FHIRPrompt.summary) { + Text(FHIRPrompt.summary.localizedDescription) + } + NavigationLink(value: FHIRPrompt.interpretation) { + Text(FHIRPrompt.interpretation.localizedDescription) + } + } + .navigationDestination(for: FHIRPrompt.self) { prompt in + PromptSettingsView(promptType: prompt) { + print("Saved \(prompt.localizedDescription)") + } + } + .toolbar { + ToolbarItem { + Button( + action: { + presentPromptSettings.toggle() + }, + label: { + Text("Dismiss") + } + ) + } + } + .navigationTitle("Prompt Settings") + } + } +} diff --git a/Tests/UITests/TestApp/TestApp.swift b/Tests/UITests/TestApp/TestApp.swift index f19934c..c481a09 100644 --- a/Tests/UITests/TestApp/TestApp.swift +++ b/Tests/UITests/TestApp/TestApp.swift @@ -1,7 +1,7 @@ // // This source file is part of the Stanford Spezi open-source project // -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) // // SPDX-License-Identifier: MIT // @@ -17,7 +17,7 @@ struct UITestsApp: App { var body: some Scene { WindowGroup { - Text("Spezi FHIR") + ContentView() .spezi(appDelegate) } } diff --git a/Tests/UITests/TestApp/TestAppDelegate.swift b/Tests/UITests/TestApp/TestAppDelegate.swift index e3e140e..368d528 100644 --- a/Tests/UITests/TestApp/TestAppDelegate.swift +++ b/Tests/UITests/TestApp/TestAppDelegate.swift @@ -1,17 +1,20 @@ // // This source file is part of the Stanford Spezi open-source project // -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) // // SPDX-License-Identifier: MIT // import Spezi +import SpeziFHIR import SwiftUI class TestAppDelegate: SpeziAppDelegate { override var configuration: Configuration { - Configuration { } + Configuration(standard: FHIR()) { + ExampleModule() + } } } diff --git a/Tests/UITests/TestAppUITests/FHIRMockDataStorageProviderTests.swift b/Tests/UITests/TestAppUITests/FHIRMockDataStorageProviderTests.swift index 059a1b8..b964e87 100644 --- a/Tests/UITests/TestAppUITests/FHIRMockDataStorageProviderTests.swift +++ b/Tests/UITests/TestAppUITests/FHIRMockDataStorageProviderTests.swift @@ -1,7 +1,7 @@ // // This source file is part of the Stanford Spezi open-source project // -// SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +// SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) // // SPDX-License-Identifier: MIT // @@ -10,10 +10,77 @@ import XCTest final class SpeziFHIRTests: XCTestCase { - func testSpeziFHIR() throws { + func testSpeziFHIRMockPatients() throws { let app = XCUIApplication() app.launch() - XCTAssert(app.staticTexts["Spezi FHIR"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Allergy Intolerances: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Conditions: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Diagnostics: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Encounters: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Immunizations: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Medications: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Observations: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Other Resources: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Procedures: 0"].waitForExistence(timeout: 2)) + + app.buttons["Select Mock Patient"].tap() + + XCTAssert(app.buttons["Jamison785 Denesik803"].waitForExistence(timeout: 20)) + app.buttons["Jamison785 Denesik803"].tap() + + sleep(3) + + app.navigationBars["Select Mock Patient"].buttons["Dismiss"].tap() + + XCTAssert(app.staticTexts["Allergy Intolerances: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Conditions: 70"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Diagnostics: 205"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Encounters: 82"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Immunizations: 12"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Medications: 31"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Observations: 769"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Other Resources: 302"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Procedures: 106"].waitForExistence(timeout: 2)) + + app.buttons["Select Mock Patient"].tap() + + XCTAssert(app.buttons["Maye976 Dickinson688"].waitForExistence(timeout: 20)) + app.buttons["Maye976 Dickinson688"].tap() + + sleep(3) + + app.navigationBars["Select Mock Patient"].buttons["Dismiss"].tap() + + XCTAssert(app.staticTexts["Allergy Intolerances: 0"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Conditions: 37"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Diagnostics: 113"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Encounters: 86"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Immunizations: 11"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Medications: 55"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Observations: 169"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Other Resources: 322"].waitForExistence(timeout: 2)) + XCTAssert(app.staticTexts["Procedures: 225"].waitForExistence(timeout: 2)) + } + + + func testPromptSettings() throws { + let app = XCUIApplication() + app.launch() + + XCTAssert(app.buttons["Settings"].waitForExistence(timeout: 2)) + app.buttons["Settings"].tap() + + XCTAssert(app.buttons["Summary Prompt"].waitForExistence(timeout: 2)) + app.buttons["Summary Prompt"].tap() + + XCTAssert(app.buttons["Save Prompt"].waitForExistence(timeout: 2)) + app.buttons["Save Prompt"].tap() + app.navigationBars["Summary Prompt"].buttons["Prompt Settings"].tap() + + XCTAssert(app.buttons["Interpretation Prompt"].waitForExistence(timeout: 2)) + app.buttons["Interpretation Prompt"].tap() + app.navigationBars["Interpretation Prompt"].buttons["Prompt Settings"].tap() + app.navigationBars["Prompt Settings"].buttons["Dismiss"].tap() } } diff --git a/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan b/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan index 9cc5ba8..098de68 100644 --- a/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan +++ b/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan @@ -15,6 +15,21 @@ "containerPath" : "container:..\/..", "identifier" : "SpeziFHIR", "name" : "SpeziFHIR" + }, + { + "containerPath" : "container:..\/..", + "identifier" : "SpeziFHIRHealthKit", + "name" : "SpeziFHIRHealthKit" + }, + { + "containerPath" : "container:..\/..", + "identifier" : "SpeziFHIRInterpretation", + "name" : "SpeziFHIRInterpretation" + }, + { + "containerPath" : "container:..\/..", + "identifier" : "SpeziFHIRMockPatients", + "name" : "SpeziFHIRMockPatients" } ] }, diff --git a/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan.license b/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan.license index 6917c4b..9bfad3b 100644 --- a/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan.license +++ b/Tests/UITests/UITests.xcodeproj/TestApp.xctestplan.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT diff --git a/Tests/UITests/UITests.xcodeproj/project.pbxproj b/Tests/UITests/UITests.xcodeproj/project.pbxproj index 82a475a..0678f2e 100644 --- a/Tests/UITests/UITests.xcodeproj/project.pbxproj +++ b/Tests/UITests/UITests.xcodeproj/project.pbxproj @@ -7,9 +7,16 @@ objects = { /* Begin PBXBuildFile section */ + 2F34D14E2B0CF1F1009300C1 /* ContentView.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2F34D14D2B0CF1F1009300C1 /* ContentView.swift */; }; + 2F34D1502B0CF42F009300C1 /* PromptSettings.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2F34D14F2B0CF42F009300C1 /* PromptSettings.swift */; }; + 2F34D1522B0CF59A009300C1 /* MockPatientSelection.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2F34D1512B0CF59A009300C1 /* MockPatientSelection.swift */; }; + 2F34D1542B0D833F009300C1 /* ExampleModule.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2F34D1532B0D833F009300C1 /* ExampleModule.swift */; }; + 2F35E9D62B015EB200CB89FF /* SpeziFHIRInterpretation in Frameworks */ = {isa = PBXBuildFile; productRef = 2F35E9D52B015EB200CB89FF /* SpeziFHIRInterpretation */; }; 2F36AD33299DB72400B1077C /* FHIRMockDataStorageProviderTests.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2F36AD32299DB72400B1077C /* FHIRMockDataStorageProviderTests.swift */; }; 2F6D139A28F5F386007C25D6 /* Assets.xcassets in Resources */ = {isa = PBXBuildFile; fileRef = 2F6D139928F5F386007C25D6 /* Assets.xcassets */; }; 2FA7382C290ADFAA007ACEB9 /* TestApp.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2FA7382B290ADFAA007ACEB9 /* TestApp.swift */; }; + 2FBD9AF92B01E4A000237A04 /* SpeziFHIRMockPatients in Frameworks */ = {isa = PBXBuildFile; productRef = 2FBD9AF82B01E4A000237A04 /* SpeziFHIRMockPatients */; }; + 2FBD9AFB2B01E4A800237A04 /* SpeziFHIRHealthKit in Frameworks */ = {isa = PBXBuildFile; productRef = 2FBD9AFA2B01E4A800237A04 /* SpeziFHIRHealthKit */; }; 2FD021DD299E0F2900E5B91B /* TestAppDelegate.swift in Sources */ = {isa = PBXBuildFile; fileRef = 2FD021DC299E0F2900E5B91B /* TestAppDelegate.swift */; }; 2FF6813F2A849F77002897C6 /* SpeziFHIR in Frameworks */ = {isa = PBXBuildFile; productRef = 2FF6813E2A849F77002897C6 /* SpeziFHIR */; }; /* End PBXBuildFile section */ @@ -25,6 +32,10 @@ /* End PBXContainerItemProxy section */ /* Begin PBXFileReference section */ + 2F34D14D2B0CF1F1009300C1 /* ContentView.swift */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.swift; path = ContentView.swift; sourceTree = ""; }; + 2F34D14F2B0CF42F009300C1 /* PromptSettings.swift */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.swift; path = PromptSettings.swift; sourceTree = ""; }; + 2F34D1512B0CF59A009300C1 /* MockPatientSelection.swift */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.swift; path = MockPatientSelection.swift; sourceTree = ""; }; + 2F34D1532B0D833F009300C1 /* ExampleModule.swift */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.swift; path = ExampleModule.swift; sourceTree = ""; }; 2F36AD32299DB72400B1077C /* FHIRMockDataStorageProviderTests.swift */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.swift; path = FHIRMockDataStorageProviderTests.swift; sourceTree = ""; }; 2F6D139228F5F384007C25D6 /* TestApp.app */ = {isa = PBXFileReference; explicitFileType = wrapper.application; includeInIndex = 0; path = TestApp.app; sourceTree = BUILT_PRODUCTS_DIR; }; 2F6D139928F5F386007C25D6 /* Assets.xcassets */ = {isa = PBXFileReference; lastKnownFileType = folder.assetcatalog; path = Assets.xcassets; sourceTree = ""; }; @@ -40,7 +51,10 @@ isa = PBXFrameworksBuildPhase; buildActionMask = 2147483647; files = ( + 2FBD9AFB2B01E4A800237A04 /* SpeziFHIRHealthKit in Frameworks */, 2FF6813F2A849F77002897C6 /* SpeziFHIR in Frameworks */, + 2FBD9AF92B01E4A000237A04 /* SpeziFHIRMockPatients in Frameworks */, + 2F35E9D62B015EB200CB89FF /* SpeziFHIRInterpretation in Frameworks */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -80,6 +94,10 @@ children = ( 2FA7382B290ADFAA007ACEB9 /* TestApp.swift */, 2FD021DC299E0F2900E5B91B /* TestAppDelegate.swift */, + 2F34D1532B0D833F009300C1 /* ExampleModule.swift */, + 2F34D14D2B0CF1F1009300C1 /* ContentView.swift */, + 2F34D1512B0CF59A009300C1 /* MockPatientSelection.swift */, + 2F34D14F2B0CF42F009300C1 /* PromptSettings.swift */, 2F6D139928F5F386007C25D6 /* Assets.xcassets */, ); path = TestApp; @@ -110,6 +128,7 @@ 2F6D138E28F5F384007C25D6 /* Sources */, 2F6D138F28F5F384007C25D6 /* Frameworks */, 2F6D139028F5F384007C25D6 /* Resources */, + 2FBD9AF52B01D32F00237A04 /* ShellScript */, ); buildRules = ( ); @@ -118,6 +137,9 @@ name = TestApp; packageProductDependencies = ( 2FF6813E2A849F77002897C6 /* SpeziFHIR */, + 2F35E9D52B015EB200CB89FF /* SpeziFHIRInterpretation */, + 2FBD9AF82B01E4A000237A04 /* SpeziFHIRMockPatients */, + 2FBD9AFA2B01E4A800237A04 /* SpeziFHIRHealthKit */, ); productName = Example; productReference = 2F6D139228F5F384007C25D6 /* TestApp.app */; @@ -151,7 +173,7 @@ attributes = { BuildIndependentTargetsInParallel = 1; LastSwiftUpdateCheck = 1410; - LastUpgradeCheck = 1410; + LastUpgradeCheck = 1500; TargetAttributes = { 2F6D139128F5F384007C25D6 = { CreatedOnToolsVersion = 14.1; @@ -201,6 +223,27 @@ }; /* End PBXResourcesBuildPhase section */ +/* Begin PBXShellScriptBuildPhase section */ + 2FBD9AF52B01D32F00237A04 /* ShellScript */ = { + isa = PBXShellScriptBuildPhase; + alwaysOutOfDate = 1; + buildActionMask = 2147483647; + files = ( + ); + inputFileListPaths = ( + ); + inputPaths = ( + ); + outputFileListPaths = ( + ); + outputPaths = ( + ); + runOnlyForDeploymentPostprocessing = 0; + shellPath = /bin/sh; + shellScript = "if [ \"${CONFIGURATION}\" = \"Debug\" ]; then\n export PATH=\"$PATH:/opt/homebrew/bin\"\n if which swiftlint > /dev/null; then\n cd ../../ && swiftlint\n else\n echo \"warning: SwiftLint not installed, download from https://github.com/realm/SwiftLint\"\n fi\nfi\n"; + }; +/* End PBXShellScriptBuildPhase section */ + /* Begin PBXSourcesBuildPhase section */ 2F6D138E28F5F384007C25D6 /* Sources */ = { isa = PBXSourcesBuildPhase; @@ -208,6 +251,10 @@ files = ( 2FA7382C290ADFAA007ACEB9 /* TestApp.swift in Sources */, 2FD021DD299E0F2900E5B91B /* TestAppDelegate.swift in Sources */, + 2F34D1542B0D833F009300C1 /* ExampleModule.swift in Sources */, + 2F34D1502B0CF42F009300C1 /* PromptSettings.swift in Sources */, + 2F34D1522B0CF59A009300C1 /* MockPatientSelection.swift in Sources */, + 2F34D14E2B0CF1F1009300C1 /* ContentView.swift in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -234,6 +281,7 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = NO; + ASSETCATALOG_COMPILER_GENERATE_SWIFT_ASSET_SYMBOL_EXTENSIONS = YES; CLANG_ANALYZER_NONNULL = YES; CLANG_ANALYZER_NUMBER_OBJECT_CONVERSION = YES_AGGRESSIVE; CLANG_CXX_LANGUAGE_STANDARD = "gnu++20"; @@ -295,6 +343,7 @@ isa = XCBuildConfiguration; buildSettings = { ALWAYS_SEARCH_USER_PATHS = NO; + ASSETCATALOG_COMPILER_GENERATE_SWIFT_ASSET_SYMBOL_EXTENSIONS = YES; CLANG_ANALYZER_NONNULL = YES; CLANG_ANALYZER_NUMBER_OBJECT_CONVERSION = YES_AGGRESSIVE; CLANG_CXX_LANGUAGE_STANDARD = "gnu++20"; @@ -485,6 +534,18 @@ /* End XCConfigurationList section */ /* Begin XCSwiftPackageProductDependency section */ + 2F35E9D52B015EB200CB89FF /* SpeziFHIRInterpretation */ = { + isa = XCSwiftPackageProductDependency; + productName = SpeziFHIRInterpretation; + }; + 2FBD9AF82B01E4A000237A04 /* SpeziFHIRMockPatients */ = { + isa = XCSwiftPackageProductDependency; + productName = SpeziFHIRMockPatients; + }; + 2FBD9AFA2B01E4A800237A04 /* SpeziFHIRHealthKit */ = { + isa = XCSwiftPackageProductDependency; + productName = SpeziFHIRHealthKit; + }; 2FF6813E2A849F77002897C6 /* SpeziFHIR */ = { isa = XCSwiftPackageProductDependency; productName = SpeziFHIR; diff --git a/Tests/UITests/UITests.xcodeproj/project.pbxproj.license b/Tests/UITests/UITests.xcodeproj/project.pbxproj.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/UITests.xcodeproj/project.pbxproj.license +++ b/Tests/UITests/UITests.xcodeproj/project.pbxproj.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/contents.xcworkspacedata.license b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/contents.xcworkspacedata.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/contents.xcworkspacedata.license +++ b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/contents.xcworkspacedata.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist.license b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist.license +++ b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/IDEWorkspaceChecks.plist.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved index 91f855a..624304d 100644 --- a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved +++ b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved @@ -9,13 +9,31 @@ "version" : "0.5.0" } }, + { + "identity" : "healthkitonfhir", + "kind" : "remoteSourceControl", + "location" : "https://github.com/StanfordBDHG/HealthKitOnFHIR", + "state" : { + "revision" : "825e96007d83ed83f81ee49eb3ebab29d7b7ba2f", + "version" : "0.2.5" + } + }, + { + "identity" : "openai", + "kind" : "remoteSourceControl", + "location" : "https://github.com/MacPaw/OpenAI", + "state" : { + "revision" : "ac5892fd0de8d283362ddc30f8e9f1a0eaba8cc0", + "version" : "0.2.5" + } + }, { "identity" : "spezi", "kind" : "remoteSourceControl", "location" : "https://github.com/StanfordSpezi/Spezi", "state" : { - "revision" : "b82fb371ab7f0446846ae8aeb56ffac56377890a", - "version" : "0.8.0" + "revision" : "092eabc50a3600d8a03b43ad0d2dcd02914b223f", + "version" : "0.8.1" } }, { @@ -27,6 +45,60 @@ "version" : "0.1.0" } }, + { + "identity" : "spezihealthkit", + "kind" : "remoteSourceControl", + "location" : "https://github.com/StanfordSpezi/SpeziHealthKit.git", + "state" : { + "revision" : "30e12a0f66bed98830dddd6ab2be06140d078aaa", + "version" : "0.4.0" + } + }, + { + "identity" : "speziml", + "kind" : "remoteSourceControl", + "location" : "https://github.com/StanfordSpezi/SpeziML.git", + "state" : { + "revision" : "786dbba6023feaedf59aeff2f92d324cc7afaaba", + "version" : "0.3.1" + } + }, + { + "identity" : "spezionboarding", + "kind" : "remoteSourceControl", + "location" : "https://github.com/StanfordSpezi/SpeziOnboarding", + "state" : { + "revision" : "70d1a740a0da8a5bc83d95bcff177ebd3e7402c0", + "version" : "0.7.0" + } + }, + { + "identity" : "spezistorage", + "kind" : "remoteSourceControl", + "location" : "https://github.com/StanfordSpezi/SpeziStorage", + "state" : { + "revision" : "e9be3c2743e462894bf56d41339b040f4060b567", + "version" : "0.5.0" + } + }, + { + "identity" : "speziviews", + "kind" : "remoteSourceControl", + "location" : "https://github.com/StanfordSpezi/SpeziViews", + "state" : { + "revision" : "eac443080926649d09a703483a6dd6f5a8bb7d51", + "version" : "0.6.2" + } + }, + { + "identity" : "swift-collections", + "kind" : "remoteSourceControl", + "location" : "https://github.com/apple/swift-collections.git", + "state" : { + "revision" : "a902f1823a7ff3c9ab2fba0f992396b948eda307", + "version" : "1.0.5" + } + }, { "identity" : "xctruntimeassertions", "kind" : "remoteSourceControl", diff --git a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved.license b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved.license index 7f16969..a3bb08d 100644 --- a/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved.license +++ b/Tests/UITests/UITests.xcodeproj/project.xcworkspace/xcshareddata/swiftpm/Package.resolved.license @@ -1,5 +1,5 @@ This source file is part of the Stanford Spezi open-source project -SPDX-FileCopyrightText: 2022 Stanford University and the project authors (see CONTRIBUTORS.md) +SPDX-FileCopyrightText: 2023 Stanford University and the project authors (see CONTRIBUTORS.md) SPDX-License-Identifier: MIT \ No newline at end of file diff --git a/Tests/UITests/UITests.xcodeproj/xcshareddata/xcschemes/TestApp.xcscheme b/Tests/UITests/UITests.xcodeproj/xcshareddata/xcschemes/TestApp.xcscheme index 81bb5e9..ba86621 100644 --- a/Tests/UITests/UITests.xcodeproj/xcshareddata/xcschemes/TestApp.xcscheme +++ b/Tests/UITests/UITests.xcodeproj/xcshareddata/xcschemes/TestApp.xcscheme @@ -8,16 +8,16 @@ + buildForRunning = "NO" + buildForProfiling = "NO" + buildForArchiving = "NO" + buildForAnalyzing = "NO"> + BlueprintIdentifier = "SpeziFHIR" + BuildableName = "SpeziFHIR" + BlueprintName = "SpeziFHIR" + ReferencedContainer = "container:../.."> + + + + + + + + + + + +