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[Repo Request]: New Templates #750

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erinyoung opened this issue Sep 6, 2023 · 3 comments
Open

[Repo Request]: New Templates #750

erinyoung opened this issue Sep 6, 2023 · 3 comments
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enhancement New feature or request

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@erinyoung
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What functionality is this repo missing?

We have several templates available in dockerfile-template, but there could be more that may be useful.

Additional templates:
[ ] R-packages (like ggtree)
[ ] tools that are snakemake wrappers (like ncov-recombinant)

@erinyoung erinyoung added the enhancement New feature or request label Sep 6, 2023
@kapsakcj
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kapsakcj commented Dec 8, 2023

Might be nice to have a rust template too? Not super important but would be nice for rust-based binfie tools!

Could start with the Dockerfile added for sylph in PR #816

@kapsakcj
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Perhaps uses this as a starting point for snakemake-based tools? https://github.com/snakemake/snakemake/blob/main/Dockerfile

@kapsakcj
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Could be useful for creating a dockerfile for a snakemake workflow: https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#containerization-of-conda-based-workflows

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