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adding usher version 0.6.3 #1014

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adding usher version 0.6.3 #1014

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erinyoung
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I find usher really useful in adding tips onto already large trees.

Usher is part of pangolin and is available on biocontainers.

This image attempts a builder stage to reduce the size. Right now, it's not building correctly - which is why this is a draft PR.

Anyone is welcome to finish this PR off.

Closes #749

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

@erinyoung erinyoung mentioned this pull request Oct 28, 2024
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[Container Request]: USHER
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