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SRA Toolkit container

Main tool: SRA Toolkit

Code repository: https://github.com/ncbi/sra-tools

Basic information on how to use this tool:

  • executable: prefetch, fastq-dump, fasterq-dump, ...
  • help: -h, --help
  • version: -V, --version
  • description: The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

Full documentation: https://github.com/ncbi/sra-tools/wiki

Example Usage

fasterq-dump SRR000001