README.md

samtools container

Main tool:

• https://www.htslib.org/
• GitHub

Additional tools:

• perl 5.34.0

Example Usage

samtools ampliconclip -b bed.file input.bam

samtools sort -T /tmp/aln.sorted -o aln.sorted.bam aln.bam

Better documentation can be found at https://www.htslib.org/doc/samtools.html