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dragonflye docker image

Main tool : dragonflye

dragonflye: Assemble bacterial isolate genomes from Nanopore reads

Example Usage

# download ONT FASTQs for testing
wget https://raw.githubusercontent.com/bactopia/bactopia-tests/main/data/species/portiera/nanopore/ERR3772599.fastq.gz

# run dragonflye using flye as the assembly algorithm
dragonflye --reads /test/ERR3772599.fastq.gz --prefix ERR3772599-nano.hq --cpus 0 --nopolish --outdir flyehq --gsize 300000 --assembler flye --nanohq