diff --git a/pykilosort/Dockerfile b/pykilosort/Dockerfile index c8670de..1cedee0 100644 --- a/pykilosort/Dockerfile +++ b/pykilosort/Dockerfile @@ -1,4 +1,4 @@ -FROM nvidia/cuda:10.0-base-ubuntu18.04 +FROM nvidia/cuda:11.0.3-base-ubuntu18.04 LABEL maintainer="Alessio Buccino " @@ -30,8 +30,8 @@ RUN echo ". $CONDA_DIR/etc/profile.d/conda.sh" >> /root/.profile # make conda activate command available from /bin/bash --interactive shells RUN conda init bash -# Install IBL python port of pykilosort -RUN git clone -b 1.4.3 https://github.com/int-brain-lab/pykilosort.git /src/pykilosort +# Install IBL python port of pykilosort - using #16 PR to remove prints from cupy +RUN git clone -b remove_prints https://github.com/alejoe91/pykilosort.git /src/pykilosort WORKDIR /src/pykilosort # modify env file so that env extends on base diff --git a/pykilosort/build.sh b/pykilosort/build.sh index 38881b7..e1052ba 100755 --- a/pykilosort/build.sh +++ b/pykilosort/build.sh @@ -1,3 +1,3 @@ #!/bin/bash -docker build -t spikeinterface/pykilosort-base:latest -t spikeinterface/pykilosort-base:1.4.3 . +docker build -t spikeinterface/pykilosort-base:latest -t spikeinterface/pykilosort-base:1.4.3.1 .