Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

how to run the pipeline with mulitiple primer pairs #49

Open
ShannonDaddy opened this issue Nov 22, 2021 · 0 comments
Open

how to run the pipeline with mulitiple primer pairs #49

ShannonDaddy opened this issue Nov 22, 2021 · 0 comments

Comments

@ShannonDaddy
Copy link

Hi, it seems that the longread_umi pipeline process one primer pair each time. Are there any option to process multiple primer pairs in just one command-line run without running the pipeline several times? I think running the pipeline several times can be a waste of computing resources. For example, the adapter trimming step (by using porechop) takes a lot of resources, I think for each sample, it only needs to be run once even the panel contains multiple pairs of primers.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant