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I installed the software in an anaconda environment under a directory named "installdir". The longread_umi.sh script mechanism that finds the pipelines removes any line with the string "install" in it, so none of the pipelines were visible! I changed the pattern to "install_" and that fixed the problem on my system. I wonder if a better mechanism might be:
find $LONGREAD_UMI_PATH/scripts -name "*.sh" -print | sed -e '/install[a-z_]*.sh/d' ...
The text was updated successfully, but these errors were encountered:
I installed the software in an anaconda environment under a directory named "installdir". The longread_umi.sh script mechanism that finds the pipelines removes any line with the string "install" in it, so none of the pipelines were visible! I changed the pattern to "install_" and that fixed the problem on my system. I wonder if a better mechanism might be:
find $LONGREAD_UMI_PATH/scripts -name "*.sh" -print | sed -e '/install[a-z_]*.sh/d' ...
The text was updated successfully, but these errors were encountered: