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All pipelines hidden due to install directory name #37

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bmilash opened this issue Oct 20, 2020 · 2 comments
Open

All pipelines hidden due to install directory name #37

bmilash opened this issue Oct 20, 2020 · 2 comments

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@bmilash
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bmilash commented Oct 20, 2020

I installed the software in an anaconda environment under a directory named "installdir". The longread_umi.sh script mechanism that finds the pipelines removes any line with the string "install" in it, so none of the pipelines were visible! I changed the pattern to "install_" and that fixed the problem on my system. I wonder if a better mechanism might be:

find $LONGREAD_UMI_PATH/scripts -name "*.sh" -print | sed -e '/install[a-z_]*.sh/d' ...

@SorenKarst
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Hi,

That is not optimal. I have added a fix to the development version, which will be available in the next release.

Regards
Søren

@bmilash
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bmilash commented Oct 22, 2020

Thanks Søren!

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