DESCRIPTION

Package: SingleR
Title: Reference-Based Single-Cell RNA-Seq Annotation
Version: 2.7.9
Date: 2024-10-28
Authors@R: c(person("Dvir", "Aran", email="dvir.aran@ucsf.edu", role=c("aut", "cph")),
    person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role=c("ctb", "cre")),
    person("Daniel", "Bunis", role="ctb"),
    person("Jared", "Andrews", email = "jared.andrews07@gmail.com", role="ctb"),
    person("Friederike", "Dündar", email = "frd2007@med.cornell.edu", role="ctb"))
Description: Performs unbiased cell type recognition from single-cell RNA
    sequencing data, by leveraging reference transcriptomic datasets of pure cell
    types to infer the cell of origin of each single cell independently. 
License: GPL-3
Depends: SummarizedExperiment
Imports: 
    methods,
    Matrix,
    S4Vectors,
    DelayedArray,
    DelayedMatrixStats,
    BiocParallel,
    BiocSingular,
    BiocNeighbors,
    stats,
    utils,
    Rcpp,
    beachmat (>= 2.21.1),
    parallel
LinkingTo:
    Rcpp,
    beachmat,
    assorthead,
    BiocNeighbors
Suggests:
    testthat,
    knitr,
    rmarkdown,
    BiocStyle,
    BiocGenerics,
    SingleCellExperiment,
    scuttle,
    scater,
    scran,
    scRNAseq,
    ggplot2,
    pheatmap,
    grDevices,
    gridExtra,
    viridis,
    celldex
biocViews: 
    Software,
    SingleCell, 
    GeneExpression, 
    Transcriptomics, 
    Classification, 
    Clustering,
    Annotation
SystemRequirements: C++17
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/SingleR-inc/SingleR
BugReports: https://github.com/SingleR-inc/SingleR/issues