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index.html
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<!doctype html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Taxus</title>
<meta name="description" content="Tree editor">
<meta name="author" content="Serafim Nenarokov">
<link rel="stylesheet" href="css/vendor/open-iconic-bootstrap.min.css">
<link rel="stylesheet" href="css/vendor/font-awesome.min.css">
<link rel="stylesheet" href="css/vendor/boostrap-dropdown.css">
<link rel="stylesheet" href="css/vendor/phylotree.css">
<link rel="stylesheet" href="css/vendor/photon.min.css">
<link rel="stylesheet" href="css/styles.css">
</head>
<body>
<div class="window" id="window">
<header class="toolbar toolbar-header draggable">
<h1 class="title" id="window-header"></h1>
<div class="toolbar-actions">
<div class="btn-group">
<button id="horizontal-contract-action" class="btn btn-default expand-contract-action" data-direction="horizontal" data-amount="-10">
<span class="ui-text fa fa-compress fa-rotate-45"></span>
</button>
<button id="horizontal-expand-action" class="btn btn-default expand-contract-action" data-direction="horizontal" data-amount="10">
<span class="ui-text fa fa-arrows-h"></span>
</button>
<button id="vertical-contract-action" class="btn btn-default expand-contract-action" data-direction="vertical" data-amount="-10">
<span class="ui-text fa fa-compress fa-rotate-135"></span>
</button>
<button id="vertical-expand-action" class="btn btn-default expand-contract-action" data-direction="vertical" data-amount="10">
<span class="ui-text fa fa-arrows-h fa-rotate-90"></span>
</button>
</div>
<div class="btn-group">
<button id="zoom-out-action" class="btn btn-default">
<span class="ui-text fa fa-search-minus"></span>
</button>
<button id="zoom-in-action" class="btn btn-default">
<span class="ui-text fa fa-search-plus"></span>
</button>
</div>
<button id="annotate-node-action" class="btn btn-default" title="Annotate node">
<span class="icon icon-pencil"></span>
</button>
<div class="btn-group">
<button id="reroot-action" class="btn btn-default" title="Reroot tree">
<span class="icon icon-shuffle"></span>
</button>
<button id="rotate-branch-action" class="btn btn-default" title="Rotate branch">
<span class="icon icon-arrows-ccw"></span>
</button>
</div>
<button id="select-descendants-action" class="btn btn-default" title="Select descendants">
<span class="icon icon-flow-tree"></span>
</button>
<div class="btn-group">
<button id="remove-selected-action" class="btn btn-default mark-button" title="Remove selected nodes from fasta file">
<span class="icon custom-icon custom-icon-remove-selected"></span>
</button>
<button id="remove-unselected-action" class="btn btn-default mark-button" title="Keep in fasta file only selected nodes">
<span class="icon custom-icon custom-icon-keep-selected"></span>
</button>
<button id="restore-selected-action" class="btn btn-default mark-button" title="Return selected nodes to fasta file">
<span class="icon custom-icon custom-icon-restore-selected"></span>
</button>
</div>
<div class="btn-group">
<button id="change-branch-color-action" class="btn btn-default" title="Change color of selected items">
<div id="change-branch-color-box" class="no-color branch-color"></div>
</button>
<button id="remove-branch-color-action" class="btn btn-default" title="Remove color of selected items">
<div id="remove-branch-color-box" class="no-color branch-color"></div>
</button>
</div>
<div id="mode-select-btn-group" class="btn-group btn-group-radio">
<button id="set-mode-to-branch-action" class="btn btn-default" data-mode="branch" title="Set selection mode to branch">
Branch
</button>
<button id="set-mode-to-taxa-action" class="btn btn-default" data-mode="taxa" title="Set selection mode to taxa">
Taxa
</button>
</div>
<button id="show-fasta-action" class="btn btn-default pull-right" title="Show fasta">
<span class="icon icon-book-open"></span>
</button>
<button id="find-action" class="btn btn-default pull-right" title="Search">
<span class="icon icon-search"></span>
</button>
</div>
<div id="search-panel" style="display: none" class="toolbar-actions">
<div id="search-mode-btn-group" class="btn-group btn-group-radio">
<button id="set-search-mode-to-tree" class="btn btn-default active" data-mode="tree" title="Search in tree">
Tree
</button>
<button id="set-search-mode-to-fasta" class="btn btn-default" data-mode="fasta" title="Search in fasta">
Fasta
</button>
</div>
<div id="taxus-search" class="btn-group">
<input id="search-input" type="text" class="form-control" placeholder="Search">
<input type="text" class="form-control" id="search-result-number" value="" disabled/>
</div>
<button id="case-sensitive-search" class="btn btn-default btn-pressed" title="Case sensitive search">
Aa
</button>
<div id="found-items-btn-group" class="btn-group">
<button id="found-items-go-to-prev" class="btn btn-default search-nav-button" disabled="disabled" data-direction="up" title="Go to previous">
<span class="icon icon-up-open"></span>
</button>
<button id="found-items-go-to-next" class="btn btn-default search-nav-button" disabled="disabled" data-direction="down" title="Go to next">
<span class="icon icon-down-open"></span>
</button>
</div>
<button id="search-select-all" class="btn btn-default" disabled="disabled" title="Select all found items">
Select All
</button>
</div>
</header>
<div class="window-content">
<div id="branch-color-picker"></div>
<div class="pane-group">
<div class="pane" id="tree-pane">
<div id="main-tree-container">
<svg id="tree_display"/>
</div>
</div>
<div class="pane-one-third sidebar padded" id="fasta-panel" style="display: none; overflow: auto">
</div>
</div>
</div>
<footer class="toolbar toolbar-footer">
<div class="footer" id="footer-text" style="display: none;">
Press and hold Ctrl to enter pan mode
</div>
<div class="footer" id="footer-meta">
</div>
</footer>
</div>
<script>if (typeof module === 'object') {window.module = module; module = undefined;}</script>
<script src="js/vendor/d3.v3.min.js"></script>
<script src="js/vendor/path-data-polyfill.js"></script>
<script src="js/helpers.js"></script>
<script src="node_modules/jquery/dist/jquery.js"></script>
<script src="node_modules/a-color-picker/dist/acolorpicker.js"></script>
<script src="js/geometry_helper.js"></script>
<script src="js/nexus.js"></script>
<script src="js/vendor/phylotree-src.js"></script>
<script src="js/phylotree-ext.js"></script>
<script src="js/phylotree_navigator.js"></script>
<script src="js/preferences.js"></script>
<script src="js/fasta_representation.js"></script>
<script src="js/fasta_mapping.js"></script>
<script src="js/node_styler.js"></script>
<script src="js/node_features/alignment_coverage.js"></script>
<script src="js/node.js"></script>
<script src="js/taxus.js"></script>
<script src="js/btn_group_radio.js"></script>
<script src="js/color_picker.js"></script>
<script src="js/search_panel.js"></script>
<script src="js/fasta_pane.js"></script>
<script src="js/progress_bar_manager.js"></script>
<script src="js/controls.js"></script>
<script src="js/scripts.js"></script>
<script>if (window.module) module = window.module;</script>
</body>
</html>