From 79bd6d0d4118bbe5383f8bba300c87dc18d52b51 Mon Sep 17 00:00:00 2001
From: Claudio Satriano <satriano@gmail.com>
Date: Mon, 23 Sep 2024 17:10:26 +0200
Subject: [PATCH] fixme

---
 sourcespec2/processing/__init__.py | 12 ++++
 sourcespec2/processing/signal.py   | 96 ++++++++++++++++++++++++++++++
 2 files changed, 108 insertions(+)
 create mode 100644 sourcespec2/processing/__init__.py
 create mode 100644 sourcespec2/processing/signal.py

diff --git a/sourcespec2/processing/__init__.py b/sourcespec2/processing/__init__.py
new file mode 100644
index 00000000..652c1376
--- /dev/null
+++ b/sourcespec2/processing/__init__.py
@@ -0,0 +1,12 @@
+
+# -*- coding: utf8 -*-
+# SPDX-License-Identifier: CECILL-2.1
+"""
+Processing utilities for SourceSpec.
+
+:copyright:
+    2013-2024 Claudio Satriano <satriano@ipgp.fr>
+:license:
+    CeCILL Free Software License Agreement v2.1
+    (http://www.cecill.info/licences.en.html)
+"""
diff --git a/sourcespec2/processing/signal.py b/sourcespec2/processing/signal.py
new file mode 100644
index 00000000..445e91bf
--- /dev/null
+++ b/sourcespec2/processing/signal.py
@@ -0,0 +1,96 @@
+# -*- coding: utf-8 -*-
+# SPDX-License-Identifier: CECILL-2.1
+"""
+Signal processing utilities.
+
+:copyright:
+    2012-2024 Claudio Satriano <satriano@ipgp.fr>
+:license:
+    CeCILL Free Software License Agreement v2.1
+    (http://www.cecill.info/licences.en.html)
+"""
+import logging
+import numpy as np
+from obspy.signal.invsim import cosine_taper as _cos_taper
+logger = logging.getLogger(__name__.rsplit('.', maxsplit=1)[-1])
+
+
+def cosine_taper(signal, width, left_taper=False):
+    """Apply a cosine taper to the signal."""
+    # TODO: this taper looks more like a hanning...
+    npts = len(signal)
+    p = 2 * width
+    tap = _cos_taper(npts, p)
+    if left_taper:
+        tap[npts // 2:] = 1.
+    signal *= tap
+
+
+# modified from: http://stackoverflow.com/q/5515720
+def smooth(signal, window_len=11, window='hanning'):
+    """Smooth the signal using a window with requested size."""
+    if signal.ndim != 1:
+        raise ValueError('smooth only accepts 1 dimension arrays.')
+    if signal.size < window_len:
+        raise ValueError('Input vector needs to be bigger than window size.')
+    if window_len < 3:
+        return signal
+    if window not in ['flat', 'hanning', 'hamming', 'bartlett', 'blackman']:
+        raise ValueError("Window is one of 'flat', 'hanning', 'hamming', "
+                         "'bartlett', 'blackman'")
+    s = np.r_[
+        2 * signal[0] - signal[window_len - 1::-1],
+        signal,
+        2 * signal[-1] - signal[-1:-window_len:-1]
+    ]
+    if window == 'flat':  # moving average
+        w = np.ones(window_len, 'd')
+    else:
+        w = eval(f'np.{window}(window_len)')  # pylint: disable=eval-used
+    y = np.convolve(w / w.sum(), s, mode='same')
+    yy = y[window_len:-window_len + 1]
+    # check if there are NaN values
+    nanindexes = np.where(np.isnan(yy))
+    yy[nanindexes] = signal[nanindexes]
+    return yy
+
+
+def remove_instr_response(trace, pre_filt=(0.5, 0.6, 40., 45.)):
+    """
+    Remove instrument response from a trace.
+
+    Trace is converted to the sensor units (m for a displacement sensor,
+    m/s for a short period or broadband velocity sensor, m/s**2 for a strong
+    motion sensor).
+
+    :param trace: Trace to be corrected.
+    :type trace: :class:`~obspy.core.trace.Trace`
+    :param pre_filt: Pre-filter frequencies (``None`` means no pre-filtering).
+    :type pre_filt: tuple of four floats
+    """
+    trace_info = trace.stats.info
+    inventory = trace.stats.inventory
+    if not inventory:
+        # empty inventory
+        raise RuntimeError(f'{trace_info}: no instrument response for trace')
+    # remove the mean...
+    trace.detrend(type='constant')
+    # ...and the linear trend
+    trace.detrend(type='linear')
+    # Define output units based on nominal units in inventory
+    # Note: ObsPy >= 1.3.0 supports the 'DEF' output unit, which will make
+    #       this step unnecessary
+    if trace.stats.units.lower() == 'm':
+        output = 'DISP'
+    if trace.stats.units.lower() == 'm/s':
+        output = 'VEL'
+    if trace.stats.units.lower() == 'm/s**2':
+        output = 'ACC'
+    # Finally remove instrument response,
+    # trace is converted to the sensor units
+    trace.remove_response(
+        inventory=inventory, output=output, pre_filt=pre_filt)
+    if any(np.isnan(trace.data)):
+        raise RuntimeError(
+            f'{trace_info}: NaN values in trace after '
+            'instrument response removal')