From 334148e7fed6e88ea1967e6b2e774ffb32e085b0 Mon Sep 17 00:00:00 2001 From: Avik Pal Date: Thu, 5 Dec 2024 18:57:09 +0530 Subject: [PATCH 1/2] feat: add PETSc to bruss --- benchmarks/NonlinearProblem/Manifest.toml | 312 ++++++++++++---------- benchmarks/NonlinearProblem/bruss.jmd | 83 +++--- 2 files changed, 204 insertions(+), 191 deletions(-) diff --git a/benchmarks/NonlinearProblem/Manifest.toml b/benchmarks/NonlinearProblem/Manifest.toml index 903c606f6..e24d29e38 100644 --- a/benchmarks/NonlinearProblem/Manifest.toml +++ b/benchmarks/NonlinearProblem/Manifest.toml @@ -1,17 +1,18 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.6" +julia_version = "1.10.7" manifest_format = "2.0" -project_hash = "8814c1199875b7c1b1e3a38f566386a806b41b9d" +project_hash = "5ce11ebea0a032bf3253691b93a43a470b925bd6" [[deps.ADTypes]] -git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" +git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.9.0" -weakdeps = ["ChainRulesCore", "EnzymeCore"] +version = "1.11.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.ANSIColoredPrinters]] @@ -95,15 +96,9 @@ version = "1.1.3" [[deps.Animations]] deps = ["Colors"] -git-tree-sha1 = "e81c509d2c8e49592413bfb0bb3b08150056c79d" +git-tree-sha1 = "e092fa223bf66a3c41f9c022bd074d916dc303e7" uuid = "27a7e980-b3e6-11e9-2bcd-0b925532e340" -version = "0.4.1" - -[[deps.Aqua]] -deps = ["Compat", "Pkg", "Test"] -git-tree-sha1 = "49b1d7a9870c87ba13dc63f8ccfcf578cb266f95" -uuid = "4c88cf16-eb10-579e-8560-4a9242c79595" -version = "0.8.9" +version = "0.4.2" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" @@ -117,9 +112,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d60a1922358aa203019b7857a2c8c37329b8736c" +git-tree-sha1 = "d5140b60b87473df18cf4fe66382b7c3596df047" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.17.0" +version = "7.17.1" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -203,18 +198,6 @@ git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.6" -[[deps.BlockArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391" -uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.1.1" - - [deps.BlockArrays.extensions] - BlockArraysBandedMatricesExt = "BandedMatrices" - - [deps.BlockArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] git-tree-sha1 = "95cb19c37ea427617e9795655667712f03058d98" @@ -253,9 +236,9 @@ version = "1.0.1+0" [[deps.Cairo]] deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] -git-tree-sha1 = "7b6ad8c35f4bc3bca8eb78127c8b99719506a5fb" +git-tree-sha1 = "71aa551c5c33f1a4415867fe06b7844faadb0ae9" uuid = "159f3aea-2a34-519c-b102-8c37f9878175" -version = "1.1.0" +version = "1.1.1" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] @@ -456,16 +439,16 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelaunayTriangulation]] -deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "PrecompileTools", "Random"] -git-tree-sha1 = "89df54fbe66e5872d91d8c2cd3a375f660c3fd64" +deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] +git-tree-sha1 = "e1371a23fd9816080c828d0ce04373857fe73d33" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "1.6.1" +version = "1.6.3" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "f8eefbb7e910f59087c4bb09ce670f235758ee4a" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "b7dbeaa770bad0980ddddf606de814cff2acb3bc" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.158.3" +version = "6.160.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -503,9 +486,9 @@ version = "2.45.1" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "ab1e6515ce15f01316a9825b02729fefa51726bd" +git-tree-sha1 = "880d1fcf95e6492a4e7d65c2866dbdbf6580d4f8" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.23.0" +version = "5.24.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -527,9 +510,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "0c99576d0b93df0aff1bed9d9adddef14e4e658f" +git-tree-sha1 = "38b6508ce802f4113401081a42549047812c2a2c" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.22" +version = "0.6.24" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -606,9 +589,9 @@ version = "0.9.3" [[deps.Documenter]] deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"] -git-tree-sha1 = "5a1ee886566f2fa9318df1273d8b778b9d42712d" +git-tree-sha1 = "d0ea2c044963ed6f37703cead7e29f70cba13d7e" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "1.7.0" +version = "1.8.0" [[deps.DocumenterTools]] deps = ["AbstractTrees", "Base64", "DocStringExtensions", "Documenter", "FileWatching", "Git", "Gumbo", "LibGit2", "OpenSSH_jll", "Sass"] @@ -633,9 +616,9 @@ version = "1.6.0" [[deps.DynamicPolynomials]] deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "bbf1ace0781d9744cb697fb856bd2c3f6568dadb" +git-tree-sha1 = "9a3ae38b460449cc9e7dd0cfb059c76028724627" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.0" +version = "0.6.1" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -650,9 +633,9 @@ version = "1.0.4" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "136f590cfed1c25b956fedc6a4d77342e3d4eaa3" +git-tree-sha1 = "39776b460f3bd686fd4e0bb16a48488ffe1ce426" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.14" +version = "0.13.17" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -669,9 +652,9 @@ version = "0.13.14" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "04c777af6ef65530a96ab68f0a81a4608113aa1d" +git-tree-sha1 = "2c366bfe21936e8f44b607eb86a1f4c110f0d841" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.5" +version = "0.8.7" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -679,9 +662,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "dec17951c0ba91ef723dc71c7687e60398125226" +git-tree-sha1 = "c2db64f193205dc5d2d4e58a315edc2eb469a9f0" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.163+0" +version = "0.0.166+0" [[deps.ExactPredicates]] deps = ["IntervalArithmetic", "Random", "StaticArrays"] @@ -691,15 +674,15 @@ version = "2.2.8" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "dcb08a0d93ec0b1cdc4af184b26b591e9695423a" +git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.10" +version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c6317308b9dc757616f0b5cb379db10494443a7" +git-tree-sha1 = "cc5231d52eb1771251fbd37171dbc408bcc8a1b6" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.2+0" +version = "2.6.4+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -752,11 +735,36 @@ git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" uuid = "29a986be-02c6-4525-aec4-84b980013641" version = "2.0.4" +[[deps.FastPower]] +git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.1" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" +git-tree-sha1 = "2dd20384bf8c6d411b5c7370865b1e9b26cb2ea3" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.4" +version = "1.16.6" +weakdeps = ["HTTP"] + + [deps.FileIO.extensions] + HTTPExt = "HTTP" [[deps.FilePaths]] deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"] @@ -792,9 +800,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "b10bdafd1647f57ace3885143936749d61638c3b" +git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.26.0" +version = "2.26.2" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -843,15 +851,15 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "5c1d8ae0efc6c2e7b1fc502cbe25def8f661b7bc" +git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.2+0" +version = "2.13.3+1" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] -git-tree-sha1 = "84dfe824bd6fdf2a5d73bb187ff31b5549b2a79c" +git-tree-sha1 = "d52e255138ac21be31fa633200b65e4e71d26802" uuid = "663a7486-cb36-511b-a19d-713bb74d65c9" -version = "0.10.4" +version = "0.10.6" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -882,9 +890,9 @@ uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" +git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.6" +version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] @@ -929,15 +937,15 @@ version = "1.3.1" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "ea372033d09e4552a04fd38361cd019f9003f4f4" +git-tree-sha1 = "399f4a308c804b446ae4c91eeafadb2fe2c54ff9" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.46.2+0" +version = "2.47.1+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" +git-tree-sha1 = "b36c7e110080ae48fdef61b0c31e6b17ada23b33" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.5+0" +version = "2.82.2+0" [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] @@ -947,9 +955,9 @@ version = "1.1.3" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.14+1" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] @@ -959,9 +967,9 @@ version = "1.12.0" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" +git-tree-sha1 = "dc6bed05c15523624909b3953686c5f5ffa10adc" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.11.0" +version = "0.11.1" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -981,10 +989,10 @@ uuid = "528830af-5a63-567c-a44a-034ed33b8444" version = "0.10.2+0" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "1336e07ba2eb75614c99496501a8f4b233e9fafe" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "ae350b8225575cc3ea385d4131c81594f86dfe4f" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.10" +version = "1.10.12" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1046,10 +1054,10 @@ uuid = "c817782e-172a-44cc-b673-b171935fbb9e" version = "0.1.7" [[deps.ImageCore]] -deps = ["Aqua", "BlockArrays", "ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] -git-tree-sha1 = "661ca04f8df633e8a021c55a22e96cf820220ede" +deps = ["ColorVectorSpace", "Colors", "FixedPointNumbers", "MappedArrays", "MosaicViews", "OffsetArrays", "PaddedViews", "PrecompileTools", "Reexport"] +git-tree-sha1 = "8c193230235bbcee22c8066b0374f63b5683c2d3" uuid = "a09fc81d-aa75-5fe9-8630-4744c3626534" -version = "0.10.4" +version = "0.10.5" [[deps.ImageIO]] deps = ["FileIO", "IndirectArrays", "JpegTurbo", "LazyModules", "Netpbm", "OpenEXR", "PNGFiles", "QOI", "Sixel", "TiffImages", "UUIDs", "WebP"] @@ -1283,9 +1291,9 @@ version = "1.3.0" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "360f6039babd6e4d6364eff0d4fc9120834a2d9a" +git-tree-sha1 = "d168f757c5043240005d507ff866e801944c4690" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.2.1" +version = "2.2.4" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1348,10 +1356,10 @@ uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" version = "1.11.0+0" [[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "ff3b4b9d35de638936a525ecd36e86a8bb919d11" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" +version = "1.7.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1367,9 +1375,9 @@ version = "1.17.0+1" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" +git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.1+0" +version = "2.40.2+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1379,9 +1387,9 @@ version = "4.7.0+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" +git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.1+0" +version = "2.40.2+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] @@ -1405,9 +1413,9 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "591de175461afd8323aa24b7686062574527aa3a" +git-tree-sha1 = "9d5872d134bd33dd3e120767004f760770958863" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.36.2" +version = "2.38.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1591,9 +1599,9 @@ version = "2.28.2+1" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" +git-tree-sha1 = "bc95bf4149bf535c09602e3acdf950d9b4376227" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.4+2" +version = "10.1.4+3" [[deps.Missings]] deps = ["DataAPI"] @@ -1633,9 +1641,9 @@ version = "1.0.20" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "90077f1e79de8c9c7c8a90644494411111f4e07b" +git-tree-sha1 = "a2710df6b0931f987530f59427441b21245d8f5e" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.5.2" +version = "1.6.0" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1673,9 +1681,9 @@ version = "0.1.2" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "22f3efdd47bd18d8a26bd559fff254e6b21000fd" +git-tree-sha1 = "e646d238e65928630a5f557c0676051a11504c9d" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.1.0" +version = "4.2.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1705,9 +1713,9 @@ version = "4.1.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionProperties", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "1589ef8aac99a21d132adf1ec5cbe6ef651760ff" +git-tree-sha1 = "46772fc296d9f16c3ab78a8ef00008ab075de677" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.3.1" +version = "1.3.3" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1728,10 +1736,10 @@ version = "1.3.1" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" [[deps.NonlinearSolveFirstOrder]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "dc8535cecb0f9d978019e44b7144b9e84ab85424" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "05a42691900f8f14e930478d5638a5f0fc973601" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.0.0" +version = "1.1.0" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] @@ -1801,9 +1809,9 @@ version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" +git-tree-sha1 = "2dace87e14256edb1dd0724ab7ba831c779b96bd" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.5+0" +version = "5.0.6+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] @@ -1831,9 +1839,9 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" +git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.9.4" +version = "1.10.0" [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" @@ -1848,9 +1856,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.3+0" [[deps.OrderedCollections]] -git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" +git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.3" +version = "1.7.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1889,9 +1897,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Packing]] deps = ["GeometryBasics"] -git-tree-sha1 = "ec3edfe723df33528e085e632414499f26650501" +git-tree-sha1 = "bc5bf2ea3d5351edf285a06b0016788a121ce92c" uuid = "19eb6ba3-879d-56ad-ad62-d5c202156566" -version = "0.5.0" +version = "0.5.1" [[deps.PaddedViews]] deps = ["OffsetArrays"] @@ -2089,9 +2097,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "6f4dca5fd8e97087a76b7ab8384d1c3086ace0b7" +git-tree-sha1 = "32f824db4e5bab64e25a12b22483a30a6b813d08" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.3" +version = "3.27.4" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2100,6 +2108,7 @@ version = "3.27.3" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStructArraysExt = "StructArrays" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2110,6 +2119,7 @@ version = "3.27.3" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2218,9 +2228,9 @@ version = "0.2.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "7527b9adb22904f0f51d8ab85d826f81ebb6f78d" +git-tree-sha1 = "f48e0239fbb7799e8d81133ea71a726ec510c9ef" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.59.2" +version = "2.65.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2266,9 +2276,9 @@ weakdeps = ["SparseArrays", "StaticArraysCore"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "25514a6f200219cd1073e4ff23a6324e4a7efe64" +git-tree-sha1 = "0444a37a25fab98adbd90baa806ee492a3af133a" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.5.0" +version = "1.6.1" [[deps.Scratch]] deps = ["Dates"] @@ -2364,9 +2374,9 @@ version = "1.10.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "6914df6005bab9940e2a96879a97a43e1fb1ce78" +git-tree-sha1 = "010b3c44301805d1ede9159f449a351d61172aa6" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.8" +version = "0.6.9" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -2404,9 +2414,9 @@ version = "2.23.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "670f2c8109e87d79788baef47880b946e529f1a2" +git-tree-sha1 = "76b44c879661552d64f382acf66faa29ab56b3d9" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.9" +version = "0.4.10" weakdeps = ["Colors"] [deps.SparseMatrixColorings.extensions] @@ -2527,17 +2537,25 @@ version = "0.4.0" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.18" -weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] +version = "0.6.21" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" - StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" StructArraysSparseArraysExt = "SparseArrays" StructArraysStaticArraysExt = "StaticArrays" + [deps.StructArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.StructIO]] git-tree-sha1 = "c581be48ae1cbf83e899b14c07a807e1787512cc" uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" @@ -2566,9 +2584,9 @@ version = "5.2.2+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "20cf607cafb31f922bce84d60379203e7a126911" +git-tree-sha1 = "6c6761e08bf5a270905cdd065be633abfa1b155b" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.34" +version = "0.3.35" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] @@ -2592,9 +2610,9 @@ version = "3.7.2" [[deps.Symbolics]] deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "0caef7687abf7094132fa3112bf5514c36a99226" +git-tree-sha1 = "ce9c95fc859007747a4faf10166201e0b10d4313" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.18.3" +version = "6.22.0" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" @@ -2714,9 +2732,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" +git-tree-sha1 = "01915bfcd62be15329c9a07235447a89d588327c" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.21.0" +version = "1.21.1" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2766,15 +2784,15 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "6a451c6f33a176150f315726eba8b92fbfdb9ae7" +git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.4+0" +version = "2.13.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" +git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.41+0" +version = "1.1.42+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2784,27 +2802,27 @@ version = "5.6.3+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" +git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+0" +version = "1.8.6+1" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" +git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+0" +version = "1.0.11+1" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" +git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+0" +version = "1.1.4+1" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" +git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.6+0" +version = "1.3.6+1" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] @@ -2814,21 +2832,21 @@ version = "0.9.11+0" [[deps.Xorg_libpthread_stubs_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8fdda4c692503d44d04a0603d9ac0982054635f9" +git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+0" +version = "0.1.1+1" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" +git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+0" +version = "1.17.0+1" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" +git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+0" +version = "1.5.0+1" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] @@ -2838,9 +2856,9 @@ version = "0.4.12" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "18cfd00df3cbbebf8ea4ec7ea6bbceb3af716bd0" +git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.3.0" +version = "1.4.0" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] diff --git a/benchmarks/NonlinearProblem/bruss.jmd b/benchmarks/NonlinearProblem/bruss.jmd index 14b33302a..7b1817bdd 100644 --- a/benchmarks/NonlinearProblem/bruss.jmd +++ b/benchmarks/NonlinearProblem/bruss.jmd @@ -155,9 +155,7 @@ function cache_and_compute_10_jacobians(adtype, f!::F, y, x, p) where {F} return J end -# XXX: run till 8 on CI -# Ns = [2^i for i in 1:8] -Ns = [2^i for i in 1:6] +Ns = [2^i for i in 1:7] adtypes = [ ( @@ -169,7 +167,7 @@ adtypes = [ AutoPolyesterForwardDiff(; chunksize=8); sparsity_detector=TracerSparsityDetector() ), - [:forwarddiff, :exact_sparse] + [:polyester, :exact_sparse] ), ( AutoSparse( @@ -355,26 +353,23 @@ First, let us experiment the scaling of each algorithm with the problem size. ```julia Ns = vcat(collect(2 .^ (2:7)), [150, 175, 200]) -# XXX: PETSc just segfaults solvers_scaling = [ - (; pkg = :nonlinearsolve, sparsity = :none, name = "NR (No Sparsity)", alg = NewtonRaphson()), - # (; pkg = :nonlinearsolve, sparsity = :approx, name = "NR (Approx. Local Sparsity)", alg = NewtonRaphson()), - (; pkg = :nonlinearsolve, sparsity = :exact, name = "NR (Exact Sparsity)", alg = NewtonRaphson()), - (; pkg = :wrapper, sparsity = :none, name = "NR [NLsolve.jl]", alg = NLsolveJL(; method = :newton, autodiff = :forward)), - (; pkg = :wrapper, sparsity = :none, name = "Mod. NR [Sundials]", alg = KINSOL()), - # (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (No Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), - # (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (Approx. Local Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), - # (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), - - (; pkg = :nonlinearsolve, sparsity = :none, name = "TR (No Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), - # (; pkg = :nonlinearsolve, sparsity = :approx, name = "TR (Approx. Local Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), - (; pkg = :nonlinearsolve, sparsity = :exact, name = "TR (Exact Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), - (; pkg = :wrapper, sparsity = :none, name = "TR [NLsolve.jl]", alg = NLsolveJL(; autodiff = :forward)), - # (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (No Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), - # (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (Approx. Local Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), - # (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), - - (; pkg = :wrapper, sparsity = :none, name = "Mod. Powell [MINPACK]", alg = CMINPACK()), + (; pkg = :nonlinearsolve, sparsity = :none, name = "NR (No Sparsity)", alg = NewtonRaphson()), + (; pkg = :nonlinearsolve, sparsity = :exact, name = "NR (Exact Sparsity)", alg = NewtonRaphson()), + (; pkg = :wrapper, sparsity = :none, name = "NR [NLsolve.jl]", alg = NLsolveJL(; method = :newton, autodiff = :forward)), + (; pkg = :wrapper, sparsity = :none, name = "Mod. NR [Sundials]", alg = KINSOL()), + (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (No Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), + (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (Approx. Local Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), + (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), + + (; pkg = :nonlinearsolve, sparsity = :none, name = "TR (No Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), + (; pkg = :nonlinearsolve, sparsity = :exact, name = "TR (Exact Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), + (; pkg = :wrapper, sparsity = :none, name = "TR [NLsolve.jl]", alg = NLsolveJL(; autodiff = :forward)), + (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (No Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), + (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (Approx. Local Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), + (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), + + (; pkg = :wrapper, sparsity = :none, name = "Mod. Powell [MINPACK]", alg = CMINPACK()), ] runtimes_scaling = fill(-1.0, length(solvers_scaling), length(Ns)) @@ -554,15 +549,15 @@ end Ns = 2 .^ (2:7) solvers_scaling_jacobian_free = [ - (; pkg = :nonlinearsolve, name = "Newton Krylov", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES())), - (; pkg = :nonlinearsolve, name = "Newton Krylov (ILU)", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES(; precs = incompletelu), concrete_jac = true)), - (; pkg = :nonlinearsolve, name = "Newton Krylov (AMG)", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid), concrete_jac = true)), - (; pkg = :nonlinearsolve, name = "Newton Krylov (AMG Jacobi)", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid_jacobi), concrete_jac = true)), - (; pkg = :nonlinearsolve, name = "TR Krylov", alg = TrustRegion(; linsolve = KrylovJL_GMRES())), - (; pkg = :nonlinearsolve, name = "TR Krylov (ILU)", alg = TrustRegion(; linsolve = KrylovJL_GMRES(; precs = incompletelu), concrete_jac = true)), - (; pkg = :nonlinearsolve, name = "TR Krylov (AMG)", alg = TrustRegion(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid), concrete_jac = true)), - (; pkg = :nonlinearsolve, name = "TR Krylov (AMG Jacobi)", alg = TrustRegion(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid_jacobi), concrete_jac = true)), - (; pkg = :wrapper, name = "Newton Krylov [Sundials]", alg = KINSOL(; linear_solver = :GMRES)), + (; pkg = :nonlinearsolve, name = "Newton Krylov", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES())), + (; pkg = :nonlinearsolve, name = "Newton Krylov (ILU)", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES(; precs = incompletelu), concrete_jac = true)), + (; pkg = :nonlinearsolve, name = "Newton Krylov (AMG)", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid), concrete_jac = true)), + (; pkg = :nonlinearsolve, name = "Newton Krylov (AMG Jacobi)", alg = NewtonRaphson(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid_jacobi), concrete_jac = true)), + (; pkg = :nonlinearsolve, name = "TR Krylov", alg = TrustRegion(; linsolve = KrylovJL_GMRES())), + (; pkg = :nonlinearsolve, name = "TR Krylov (ILU)", alg = TrustRegion(; linsolve = KrylovJL_GMRES(; precs = incompletelu), concrete_jac = true)), + (; pkg = :nonlinearsolve, name = "TR Krylov (AMG)", alg = TrustRegion(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid), concrete_jac = true)), + (; pkg = :nonlinearsolve, name = "TR Krylov (AMG Jacobi)", alg = TrustRegion(; linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid_jacobi), concrete_jac = true)), + (; pkg = :wrapper, name = "Newton Krylov [Sundials]", alg = KINSOL(; linear_solver = :GMRES)), ] runtimes_scaling = zeros(length(solvers_scaling_jacobian_free), length(Ns)) .- 1 @@ -696,18 +691,18 @@ exploit sparsity will automatically do so. ```julia solvers_all = [ - (; pkg = :nonlinearsolve, name = "Default PolyAlg", solver = Dict(:alg => FastShortcutNonlinearPolyalg())), - (; pkg = :nonlinearsolve, name = "RobustMultiNewton (GMRES)", solver = Dict(:alg => RobustMultiNewton(; linsolve = KrylovJL_GMRES()))), - (; pkg = :nonlinearsolve, name = "Newton Raphson", solver = Dict(:alg => NewtonRaphson(; linsolve = nothing))), - (; pkg = :nonlinearsolve, name = "Newton Krylov", solver = Dict(:alg => NewtonRaphson(; linsolve = KrylovJL_GMRES()))), - (; pkg = :nonlinearsolve, name = "Trust Region", solver = Dict(:alg => TrustRegion())), - (; pkg = :nonlinearsolve, name = "TR Krylov", solver = Dict(:alg => TrustRegion(; linsolve = KrylovJL_GMRES()))), - (; pkg = :wrapper, name = "NR [NLsolve.jl]", solver = Dict(:alg => NLsolveJL(; method = :newton, autodiff = :forward))), - (; pkg = :wrapper, name = "TR [NLsolve.jl]", solver = Dict(:alg => NLsolveJL(; autodiff = :forward))), - (; pkg = :wrapper, name = "NR [Sundials]", solver = Dict(:alg => KINSOL())), - (; pkg = :wrapper, name = "Newton Krylov [Sundials]", solver = Dict(:alg => KINSOL(; linear_solver = :GMRES))), - - (; pkg = :wrapper, name = "Mod. Powell [MINPACK]", solver = Dict(:alg => CMINPACK())), + (; pkg = :nonlinearsolve, name = "Default PolyAlg", solver = Dict(:alg => FastShortcutNonlinearPolyalg())), + (; pkg = :nonlinearsolve, name = "RobustMultiNewton (GMRES)", solver = Dict(:alg => RobustMultiNewton(; linsolve = KrylovJL_GMRES()))), + (; pkg = :nonlinearsolve, name = "Newton Raphson", solver = Dict(:alg => NewtonRaphson(; linsolve = nothing))), + (; pkg = :nonlinearsolve, name = "Newton Krylov", solver = Dict(:alg => NewtonRaphson(; linsolve = KrylovJL_GMRES()))), + (; pkg = :nonlinearsolve, name = "Trust Region", solver = Dict(:alg => TrustRegion())), + (; pkg = :nonlinearsolve, name = "TR Krylov", solver = Dict(:alg => TrustRegion(; linsolve = KrylovJL_GMRES()))), + (; pkg = :wrapper, name = "NR [NLsolve.jl]", solver = Dict(:alg => NLsolveJL(; method = :newton, autodiff = :forward))), + (; pkg = :wrapper, name = "TR [NLsolve.jl]", solver = Dict(:alg => NLsolveJL(; autodiff = :forward))), + (; pkg = :wrapper, name = "NR [Sundials]", solver = Dict(:alg => KINSOL())), + (; pkg = :wrapper, name = "Newton Krylov [Sundials]", solver = Dict(:alg => KINSOL(; linear_solver = :GMRES))), + + (; pkg = :wrapper, name = "Mod. Powell [MINPACK]", solver = Dict(:alg => CMINPACK())), ]; ``` From b360d8fc7a1aca5e5713196fe4ae5fb54f452a29 Mon Sep 17 00:00:00 2001 From: Avik Pal Date: Wed, 9 Apr 2025 17:47:50 -0400 Subject: [PATCH 2/2] fix: try disabling gc --- benchmarks/NonlinearProblem/Manifest.toml | 948 ++++++++++++---------- benchmarks/NonlinearProblem/bruss.jmd | 25 +- 2 files changed, 516 insertions(+), 457 deletions(-) diff --git a/benchmarks/NonlinearProblem/Manifest.toml b/benchmarks/NonlinearProblem/Manifest.toml index e24d29e38..97a171749 100644 --- a/benchmarks/NonlinearProblem/Manifest.toml +++ b/benchmarks/NonlinearProblem/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.7" +julia_version = "1.11.4" manifest_format = "2.0" -project_hash = "5ce11ebea0a032bf3253691b93a43a470b925bd6" +project_hash = "308a8384d500526e6b98f2e7f96c8f0edd2d9daf" [[deps.ADTypes]] -git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" +git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.11.0" +version = "1.14.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -37,25 +37,24 @@ uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" version = "0.4.5" [[deps.Accessors]] -deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"] -git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8" +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "3b86719127f50670efe356bc11073d84b4ed7a5d" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.38" +version = "0.1.42" [deps.Accessors.extensions] - AccessorsAxisKeysExt = "AxisKeys" - AccessorsDatesExt = "Dates" - AccessorsIntervalSetsExt = "IntervalSets" - AccessorsStaticArraysExt = "StaticArrays" - AccessorsStructArraysExt = "StructArrays" - AccessorsTestExt = "Test" - AccessorsUnitfulExt = "Unitful" + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" [deps.Accessors.weakdeps] AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" - Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" @@ -69,12 +68,13 @@ version = "0.3.8" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" +git-tree-sha1 = "f7817e2e585aa6d924fd714df1e2a84be7896c60" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.1.1" -weakdeps = ["StaticArrays"] +version = "4.3.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdaptivePredicates]] @@ -84,9 +84,9 @@ version = "1.2.0" [[deps.AlgebraicMultigrid]] deps = ["CommonSolve", "LinearAlgebra", "LinearSolve", "Printf", "Reexport", "SparseArrays"] -git-tree-sha1 = "eb3dbbca423d8e8a1d4061b890f775dcd31b8d7c" +git-tree-sha1 = "327499cc7227323ef10a726156ab53eb7830aa1a" uuid = "2169fc97-5a83-5252-b627-83903c6c433c" -version = "0.6.0" +version = "1.0.0" [[deps.AliasTables]] deps = ["PtrArrays", "Random"] @@ -102,7 +102,7 @@ version = "0.4.2" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -112,9 +112,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d5140b60b87473df18cf4fe66382b7c3596df047" +git-tree-sha1 = "017fcb757f8e921fb44ee063a7aafe5f89b86dd1" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.17.1" +version = "7.18.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -144,9 +144,9 @@ version = "7.17.1" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "492681bc44fac86804706ddb37da10880a2bd528" +git-tree-sha1 = "4e25216b8fea1908a0ce0f5d87368587899f75be" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.10.4" +version = "1.11.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -154,6 +154,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Automa]] deps = ["PrecompileTools", "SIMD", "TranscodingStreams"] @@ -175,12 +176,13 @@ version = "0.4.7" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" +deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "e38fbc49a620f5d0b660d7f543db1009fe0f8336" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.5.0" +version = "1.6.0" [[deps.Bijections]] git-tree-sha1 = "d8b0439d2be438a5f2cd68ec158fe08a7b2595b7" @@ -200,19 +202,19 @@ version = "0.1.6" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "95cb19c37ea427617e9795655667712f03058d98" +git-tree-sha1 = "bfdafcc043eb34fe21a2dae769734fd918546d6b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.1.0" +version = "1.1.3" weakdeps = ["ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+2" +version = "1.0.9+0" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -227,6 +229,7 @@ version = "0.2.6" [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" +version = "1.11.0" [[deps.CRlibm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -242,26 +245,21 @@ version = "1.1.1" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "c3161fbfe99d9d7ee121cf2017d49966b152857c" +git-tree-sha1 = "a10fffc5ef0ab87666c0c4883e9116d516d76156" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.12.16" +version = "0.13.3" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" +git-tree-sha1 = "2ac646d71d0d24b44f3f8c84da8c9f4d70fb67df" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.2+1" - -[[deps.Cassette]] -git-tree-sha1 = "f8764df8d9d2aec2812f009a1ac39e46c33354b8" -uuid = "7057c7e9-c182-5462-911a-8362d720325c" -version = "0.3.14" +version = "1.18.4+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc" +git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.25.0" +version = "1.25.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -275,33 +273,37 @@ version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.6" +version = "0.7.8" [[deps.ColorBrewer]] -deps = ["Colors", "JSON", "Test"] -git-tree-sha1 = "61c5334f33d91e570e1d0c3eb5465835242582c4" +deps = ["Colors", "JSON"] +git-tree-sha1 = "e771a63cc8b539eca78c85b0cabd9233d6c8f06f" uuid = "a2cac450-b92f-5266-8821-25eda20663c8" -version = "0.4.0" +version = "0.4.1" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b" +git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.27.1" +version = "3.29.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "b10d0b65641d57b8b4d5e234446582de5047050d" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.5" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" weakdeps = ["SpecialFunctions"] [deps.ColorVectorSpace.extensions] @@ -309,9 +311,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" +git-tree-sha1 = "64e15186f0aa277e174aa81798f7eb8598e0157e" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.11" +version = "0.13.0" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -370,9 +372,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1" +git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.2" +version = "2.5.0" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] @@ -425,9 +427,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.20" +version = "0.18.22" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -437,24 +439,27 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DelaunayTriangulation]] deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] -git-tree-sha1 = "e1371a23fd9816080c828d0ce04373857fe73d33" +git-tree-sha1 = "5620ff4ee0084a6ab7097a27ba0c19290200b037" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "1.6.3" +version = "1.6.4" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "b7dbeaa770bad0980ddddf606de814cff2acb3bc" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "e384a2cf3bb402e6dc66b1503ade22c7c1471c4d" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.160.0" +version = "6.167.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseForwardDiffExt = ["ForwardDiff"] + DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -469,6 +474,8 @@ version = "6.160.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -480,15 +487,15 @@ version = "6.160.0" [[deps.DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "167a3a413b954aca9e64d785f8ea096e23e5afb8" +git-tree-sha1 = "53aa030c02c786270542debbb577b53f6383796b" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.45.1" +version = "2.48.0" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "880d1fcf95e6492a4e7d65c2866dbdbf6580d4f8" +git-tree-sha1 = "516d553f5deee7c55b2945b5edf05b6542837887" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.24.0" +version = "5.24.1" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -510,22 +517,24 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "38b6508ce802f4113401081a42549047812c2a2c" +git-tree-sha1 = "70e500f6d5d50091d87859251de7b8cd060c1cce" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.24" +version = "0.6.50" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" DifferentiationInterfaceDiffractorExt = "Diffractor" - DifferentiationInterfaceEnzymeExt = "Enzyme" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" - DifferentiationInterfaceForwardDiffExt = "ForwardDiff" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" - DifferentiationInterfaceReverseDiffExt = "ReverseDiff" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" DifferentiationInterfaceStaticArraysExt = "StaticArrays" DifferentiationInterfaceSymbolicsExt = "Symbolics" @@ -534,16 +543,20 @@ version = "0.6.24" [deps.DifferentiationInterface.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" @@ -564,12 +577,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3101c32aab536e7a27b1763c0797dba151b899ad" +git-tree-sha1 = "0b4190661e8a4e51a842070e7dd4fae440ddb7f4" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.113" +version = "0.25.118" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -582,16 +596,15 @@ version = "0.25.113" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "e7b7e6f178525d17c720ab9c081e4ef04429f860" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.4" [[deps.Documenter]] deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "CodecZlib", "Dates", "DocStringExtensions", "Downloads", "Git", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "TOML", "Test", "Unicode"] -git-tree-sha1 = "d0ea2c044963ed6f37703cead7e29f70cba13d7e" +git-tree-sha1 = "9d733459cea04dcf1c41522ec25c31576387be8a" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -version = "1.8.0" +version = "1.10.1" [[deps.DocumenterTools]] deps = ["AbstractTrees", "Base64", "DocStringExtensions", "Documenter", "FileWatching", "Git", "Gumbo", "LibGit2", "OpenSSH_jll", "Sass"] @@ -601,9 +614,9 @@ version = "0.1.20" [[deps.DomainSets]] deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "490392af2c7d63183bfa2c8aaa6ab981c5ba7561" +git-tree-sha1 = "a7e9f13f33652c533d49868a534bfb2050d1365f" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.14" +version = "0.7.15" weakdeps = ["Makie"] [deps.DomainSets.extensions] @@ -627,19 +640,20 @@ uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.4+0" [[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +git-tree-sha1 = "bddad79635af6aec424f53ed8aad5d7555dc6f00" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" +version = "1.0.5" [[deps.Enzyme]] -deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "39776b460f3bd686fd4e0bb16a48488ffe1ce426" +deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] +git-tree-sha1 = "59c1db6e150d55f2df6a1383759931bf8571c6b8" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.17" +version = "0.13.35" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" EnzymeChainRulesCoreExt = "ChainRulesCore" + EnzymeGPUArraysCoreExt = "GPUArraysCore" EnzymeLogExpFunctionsExt = "LogExpFunctions" EnzymeSpecialFunctionsExt = "SpecialFunctions" EnzymeStaticArraysExt = "StaticArrays" @@ -647,14 +661,15 @@ version = "0.13.17" [deps.Enzyme.weakdeps] BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "2c366bfe21936e8f44b607eb86a1f4c110f0d841" +git-tree-sha1 = "0cdb7af5c39e92d78a0ee8d0a447d32f7593137e" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.7" +version = "0.8.8" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -662,9 +677,9 @@ weakdeps = ["Adapt"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "c2db64f193205dc5d2d4e58a315edc2eb469a9f0" +git-tree-sha1 = "c29af735ddb2381732cdf5dd72fc32069315619d" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.166+0" +version = "0.0.173+0" [[deps.ExactPredicates]] deps = ["IntervalArithmetic", "Random", "StaticArrays"] @@ -680,25 +695,24 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cc5231d52eb1771251fbd37171dbc408bcc8a1b6" +git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.4+0" +version = "2.6.5+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.Expronicon]] -deps = ["MLStyle", "Pkg", "TOML"] -git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" -uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" -version = "0.8.5" +[[deps.ExproniconLite]] +git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" +uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" +version = "0.10.14" [[deps.Extents]] -git-tree-sha1 = "81023caa0021a41712685887db1fc03db26f41f5" +git-tree-sha1 = "063512a13dbe9c40d999c439268539aa552d1ae6" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.4" +version = "0.1.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] @@ -708,15 +722,15 @@ version = "6.1.2+0" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +git-tree-sha1 = "7de7c78d681078f027389e067864a8d53bd7c3c9" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" +version = "1.8.1" [[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6d6219a004b8cf1e0b4dbe27a2860b8e04eba0be" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+1" +version = "3.3.11+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] @@ -729,16 +743,10 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" - [[deps.FastPower]] -git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +git-tree-sha1 = "df32f07f373f06260cd6af5371385b5ef85dd762" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" -version = "1.1.1" +version = "1.1.2" [deps.FastPower.extensions] FastPowerEnzymeExt = "Enzyme" @@ -758,9 +766,9 @@ version = "1.1.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "2dd20384bf8c6d411b5c7370865b1e9b26cb2ea3" +git-tree-sha1 = "b66970a70db13f45b7e57fbda1736e1cf72174ea" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.6" +version = "1.17.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -774,9 +782,9 @@ version = "0.8.3" [[deps.FilePathsBase]] deps = ["Compat", "Dates"] -git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361" +git-tree-sha1 = "3bab2c5aa25e7840a4b065805c0cdfc01f3068d2" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.22" +version = "0.9.24" weakdeps = ["Mmap", "Test"] [deps.FilePathsBase.extensions] @@ -785,6 +793,7 @@ weakdeps = ["Mmap", "Test"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -800,9 +809,9 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" +git-tree-sha1 = "f089ab1f834470c525562030c8cfde4025d5e915" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.26.2" +version = "2.27.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -824,9 +833,9 @@ version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "db16beca600632c95fc8aca29890d83788dd8b23" +git-tree-sha1 = "301b5d5d731a0654825f1f2e906990f7141a106b" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.96+0" +version = "2.16.0+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -851,9 +860,9 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" +git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.3+1" +version = "2.13.4+0" [[deps.FreeTypeAbstraction]] deps = ["ColorVectorSpace", "Colors", "FreeType", "GeometryBasics"] @@ -863,15 +872,9 @@ version = "0.10.6" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2" +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.14+0" - -[[deps.FunctionProperties]] -deps = ["Cassette", "DiffRules"] -git-tree-sha1 = "bf7c740307eb0ee80e05d8aafbd0c5a901578398" -uuid = "f62d2435-5019-4c03-9749-2d4c77af0cbc" -version = "0.1.2" +version = "1.0.17+0" [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" @@ -887,6 +890,7 @@ version = "0.1.3" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -896,26 +900,26 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "72408a76694e87e735f515a499ba1e069d232d39" +git-tree-sha1 = "b08c164134dd0dbc76ff54e45e016cf7f30e16a4" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.0.1" +version = "1.3.2" [[deps.GeoFormatTypes]] -git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271" +git-tree-sha1 = "8e233d5167e63d708d41f87597433f59a0f213fe" uuid = "68eda718-8dee-11e9-39e7-89f7f65f511f" -version = "0.4.2" +version = "0.4.4" [[deps.GeoInterface]] -deps = ["Extents", "GeoFormatTypes"] -git-tree-sha1 = "826b4fd69438d9ce4d2b19de6bc2f970f45f0f88" +deps = ["DataAPI", "Extents", "GeoFormatTypes"] +git-tree-sha1 = "294e99f19869d0b0cb71aef92f19d03649d028d5" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.8" +version = "1.4.1" [[deps.GeometryBasics]] -deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "b62f2b2d76cee0d61a2ef2b3118cd2a3215d3134" +deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"] +git-tree-sha1 = "65e3f5c519c3ec6a4c59f4c3ba21b6ff3add95b0" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.11" +version = "0.5.7" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -925,9 +929,9 @@ version = "0.21.0+0" [[deps.Giflib_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0224cce99284d997f6880a42ef715a37c99338d1" +git-tree-sha1 = "6570366d757b50fabae9f4315ad74d2e40c0560a" uuid = "59f7168a-df46-5410-90c8-f2779963d0ec" -version = "5.2.2+0" +version = "5.2.3+0" [[deps.Git]] deps = ["Git_jll"] @@ -937,15 +941,15 @@ version = "1.3.1" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "399f4a308c804b446ae4c91eeafadb2fe2c54ff9" +git-tree-sha1 = "2f6d6f7e6d6de361865d4394b802c02fc944fc7c" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.47.1+0" +version = "2.49.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "b36c7e110080ae48fdef61b0c31e6b17ada23b33" +git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.82.2+0" +version = "2.82.4+0" [[deps.Graphics]] deps = ["Colors", "LinearAlgebra", "NaNMath"] @@ -954,16 +958,16 @@ uuid = "a2bd30eb-e257-5431-a919-1863eab51364" version = "1.1.3" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+1" +version = "1.3.15+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1dc470db8b1131cfc7fb4c115de89fe391b9e780" +git-tree-sha1 = "3169fd3440a02f35e549728b0890904cfd4ae58a" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.12.0" +version = "1.12.1" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] @@ -978,9 +982,9 @@ version = "1.0.2" [[deps.Gumbo]] deps = ["AbstractTrees", "Gumbo_jll", "Libdl"] -git-tree-sha1 = "a1a138dfbf9df5bace489c7a9d5196d6afdfa140" +git-tree-sha1 = "eab9e02310eb2c3e618343c859a12b51e7577f5e" uuid = "708ec375-b3d6-5a57-a7ce-8257bf98657a" -version = "0.8.2" +version = "0.8.3" [[deps.Gumbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -990,15 +994,15 @@ version = "0.10.2+0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ae350b8225575cc3ea385d4131c81594f86dfe4f" +git-tree-sha1 = "c67b33b085f6e2faf8bf79a61962e7339a81129c" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.12" +version = "1.10.15" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] -git-tree-sha1 = "401e4f3f30f43af2c8478fc008da50096ea5240f" +git-tree-sha1 = "55c53be97790242c29031e5cd45e8ac296dadda3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "8.3.1+0" +version = "8.5.0+0" [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] @@ -1014,21 +1018,21 @@ version = "0.1.17" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b" +git-tree-sha1 = "f93a9ce66cd89c9ba7a4695a47fd93b4c6bc59fa" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.2+1" +version = "2.12.0+0" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.25" +version = "0.3.28" [[deps.IJulia]] -deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] -git-tree-sha1 = "1b1299f7d6617291f3d260e9f5b0250afdaac8c0" +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "UUIDs", "ZMQ"] +git-tree-sha1 = "be30be76e25b0aff2c9a85930ed3ac34c5f10c83" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.26.0" +version = "1.27.0" [[deps.IOCapture]] deps = ["Logging", "Random"] @@ -1100,13 +1104,14 @@ version = "0.1.2" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" +git-tree-sha1 = "0f14a5456bdc6b9731a5682f439a672750a09e48" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.1+0" +version = "2025.0.4+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -1119,10 +1124,10 @@ weakdeps = ["Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] -deps = ["CRlibm_jll", "LinearAlgebra", "MacroTools", "RoundingEmulator"] -git-tree-sha1 = "24c095b1ec7ee58b936985d31d5df92f9b9cfebb" +deps = ["CRlibm_jll", "LinearAlgebra", "MacroTools", "OpenBLASConsistentFPCSR_jll", "RoundingEmulator"] +git-tree-sha1 = "5aad168b75fc3b6b25e99feb1e6e3168d41e4c08" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "0.22.19" +version = "0.22.28" weakdeps = ["DiffRules", "ForwardDiff", "IntervalSets", "RecipesBase"] [deps.IntervalArithmetic.extensions] @@ -1153,9 +1158,9 @@ weakdeps = ["Dates", "Test"] InverseFunctionsTestExt = "Test" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "e2222959fbc6c19554dc15174c81bf7bf3aa691c" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.4" [[deps.Isoband]] deps = ["isoband_jll"] @@ -1175,9 +1180,9 @@ version = "1.0.0" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b" +git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.6.1" +version = "1.7.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1185,23 +1190,23 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" + [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] -git-tree-sha1 = "fa6d0bcff8583bac20f1ffa708c3913ca605c611" +git-tree-sha1 = "9496de8fb52c224a2e3f9ff403947674517317d9" uuid = "b835a17e-a41a-41e7-81f0-2f016b05efe0" -version = "0.1.5" +version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c" +git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.4+0" - -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" +version = "3.1.1+0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -1211,9 +1216,9 @@ version = "0.6.9" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "4f20a2df85a9e5d55c9e84634bbf808ed038cabd" +git-tree-sha1 = "b29d37ce30fa401a4563b18880ab91f979a29734" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.8" +version = "0.9.10" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1223,15 +1228,15 @@ version = "3.100.2+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "36bdbc52f13a7d1dcb0f3cd694e01677a515655b" +git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.0+0" +version = "4.0.1+0" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" +git-tree-sha1 = "5fcfea6df2ff3e4da708a40c969c3812162346df" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.1.3" +version = "9.2.0" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1241,9 +1246,9 @@ version = "9.1.3" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" +git-tree-sha1 = "4b5ad6a4ffa91a00050a964492bc4f86bb48cea0" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.34+0" +version = "0.0.35+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1253,9 +1258,9 @@ version = "18.1.7+0" [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" +git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.2+1" +version = "2.10.3+0" [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" @@ -1264,9 +1269,9 @@ version = "1.4.0" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" +git-tree-sha1 = "cd10d2cc78d34c0e2a3a36420ab607b611debfbb" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.5" +version = "0.16.7" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1291,9 +1296,9 @@ version = "1.3.0" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "d168f757c5043240005d507ff866e801944c4690" +git-tree-sha1 = "866ce84b15e54d758c11946aacd4e5df0e60b7a3" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.2.4" +version = "2.6.1" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1310,6 +1315,7 @@ version = "2.2.4" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LazyModules]] git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" @@ -1324,16 +1330,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1342,18 +1349,19 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" +version = "3.2.2+2" [[deps.Libgcrypt_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" +git-tree-sha1 = "d77592fa54ad343c5043b6f38a03f1a3c3959ffe" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.11.0+0" +version = "1.11.1+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] @@ -1363,33 +1371,33 @@ version = "1.7.0+0" [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c6ce1e19f3aec9b59186bdf06cdf3c4fc5f5f3e6" +git-tree-sha1 = "df37206100d39f79b3376afb6b9cee4970041c61" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.50.0+0" +version = "1.51.1+0" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "61dfdba58e585066d8bce214c5a51eaa0539f269" +git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.17.0+1" +version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "84eef7acd508ee5b3e956a2ae51b05024181dee0" +git-tree-sha1 = "a31572773ac1b745e0343fe5e2c8ddda7a37e997" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.2+0" +version = "2.41.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "b404131d06f7886402758c9ce2214b636eb4d54a" +git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.0+0" +version = "4.7.1+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "edbf5309f9ddf1cab25afc344b1e8150b7c832f9" +git-tree-sha1 = "321ccef73a96ba828cd51f2ab5b9f917fa73945a" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.2+0" +version = "2.41.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] @@ -1410,12 +1418,13 @@ version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "9d5872d134bd33dd3e120767004f760770958863" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "2bbbdcce6d80a4aed929365d0d97b15b264bb9e7" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.38.0" +version = "3.7.2" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1424,13 +1433,16 @@ version = "2.38.0" LinearSolveCUDSSExt = "CUDSS" LinearSolveEnzymeExt = "EnzymeCore" LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" + LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] + LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" + LinearSolveSparseArraysExt = "SparseArrays" + LinearSolveSparspakExt = ["SparseArrays", "Sparspak"] [deps.LinearSolve.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" @@ -1439,19 +1451,22 @@ version = "2.38.0" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.28" +version = "0.3.29" [deps.LogExpFunctions.extensions] LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1465,6 +1480,7 @@ version = "0.3.28" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1474,9 +1490,9 @@ version = "1.1.0" [[deps.LoopVectorization]] deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" +git-tree-sha1 = "e5afce7eaf5b5ca0d444bcb4dc4fd78c54cbbac0" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.171" +version = "0.12.172" weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [deps.LoopVectorization.extensions] @@ -1491,14 +1507,9 @@ version = "1.3.0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" +git-tree-sha1 = "5de60bc6cb3899cd318d80d627560fae2e2d99ae" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.2.0+0" - -[[deps.MLStyle]] -git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" -uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.17" +version = "2025.0.1+1" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] @@ -1516,9 +1527,9 @@ version = "0.20.22" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "7715e65c47ba3941c502bffb7f266a41a7f54423" +git-tree-sha1 = "3aa3210044138a1749dbd350a9ba8680869eb503" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.3+0" +version = "4.3.0+1" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1528,27 +1539,26 @@ version = "0.1.11" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142" +git-tree-sha1 = "ff91ca13c7c472cef700f301c8d752bc2aaff1a8" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.5.1+0" +version = "5.5.3+0" [[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "2fa9ee3e63fd3a4f7a9a4f4744a52f4856de82df" +git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.13" +version = "0.5.15" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "5e4e0e027642293da251bf35dac408d692ccba8b" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "PNGFiles", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] +git-tree-sha1 = "6c286ee413da382fd2734992a08cfdb4e13f8acf" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.21.16" +version = "0.22.3" [[deps.MakieCore]] deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] -git-tree-sha1 = "ae4dbe0fcf1594ed98594e5f4ee685295a2a6f74" +git-tree-sha1 = "903ef1d9d326ebc4a9e6cf24f22194d8da022b50" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.8.10" +version = "0.9.2" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1563,6 +1573,7 @@ version = "0.4.2" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MarkdownAST]] deps = ["AbstractTrees", "Markdown"] @@ -1595,7 +1606,7 @@ version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1611,6 +1622,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] @@ -1618,9 +1630,15 @@ git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" version = "0.3.4" +[[deps.Moshi]] +deps = ["ExproniconLite", "Jieko"] +git-tree-sha1 = "453de0fc2be3d11b9b93ca4d0fddd91196dcf1ed" +uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" +version = "0.3.5" + [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1641,15 +1659,15 @@ version = "1.0.20" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "a2710df6b0931f987530f59427441b21245d8f5e" +git-tree-sha1 = "491bdcdc943fcbc4c005900d7463c9f216aabf4c" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.0" +version = "1.6.4" [[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "b14c7be6046e7d48e9063a0053f95ee0fc954176" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" +version = "7.9.1" [[deps.NLsolve]] deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] @@ -1659,9 +1677,9 @@ version = "4.5.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" +version = "1.1.3" [[deps.Netpbm]] deps = ["FileIO", "ImageCore", "ImageMetadata"] @@ -1681,9 +1699,9 @@ version = "0.1.2" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "e646d238e65928630a5f557c0676051a11504c9d" +git-tree-sha1 = "7ae7322d658544bd8f6b24a1a0374a6b4ac1fc7e" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.2.0" +version = "4.5.1" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1712,10 +1730,10 @@ version = "4.2.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionProperties", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "46772fc296d9f16c3ab78a8ef00008ab075de677" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "f8ece81557f7e42879f017fa089e5283988a5f67" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.3.3" +version = "1.5.2" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1737,27 +1755,35 @@ version = "1.3.3" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "05a42691900f8f14e930478d5638a5f0fc973601" +git-tree-sha1 = "53e9df7c663c5b9ee5443ce4591f145143095c23" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.1.0" +version = "1.3.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "066d4940938f4bb5fd1ce146e61a373f40b89d31" +git-tree-sha1 = "61341153cec9ab307b6bae09f2661ebbd34cc1f9" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.0.0" +version = "1.2.1" +weakdeps = ["ForwardDiff"] + + [deps.NonlinearSolveQuasiNewton.extensions] + NonlinearSolveQuasiNewtonForwardDiffExt = "ForwardDiff" [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "DiffEqBase", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "cc97c44e396ab820401c8c404bc1fd18d4c884bd" +git-tree-sha1 = "7e94679f6989398b90a4d665f6b0d16c0263a451" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.0.0" +version = "1.1.1" +weakdeps = ["ForwardDiff"] + + [deps.NonlinearSolveSpectralMethods.extensions] + NonlinearSolveSpectralMethodsForwardDiffExt = "ForwardDiff" [[deps.ObjectFile]] deps = ["Reexport", "StructIO"] -git-tree-sha1 = "7249afa1c4dfd86bfbcc9b28939ab6ef844f4e11" +git-tree-sha1 = "09b1fe6ff16e6587fa240c165347474322e77cf1" uuid = "d8793406-e978-5875-9003-1fc021f44a92" -version = "0.4.2" +version = "0.4.4" [[deps.Observables]] git-tree-sha1 = "7438a59546cf62428fc9d1bc94729146d37a7225" @@ -1765,9 +1791,9 @@ uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" [[deps.OffsetArrays]] -git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" +git-tree-sha1 = "a414039192a155fb38c4599a60110f0018c6ec82" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.14.1" +version = "1.16.0" weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] @@ -1781,14 +1807,20 @@ version = "1.3.5+1" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "ece4587683695fe4c5f20e990da0ed7e83c351e7" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.29+0" + +[[deps.OpenBLASConsistentFPCSR_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "567515ca155d0020a45b05175449b499c63e7015" +uuid = "6cdc7f73-28fd-5e50-80fb-958a8875b1af" +version = "0.3.29+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1805,19 +1837,19 @@ version = "3.2.4+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+2" +version = "0.8.1+4" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "2dace87e14256edb1dd0724ab7ba831c779b96bd" +git-tree-sha1 = "047b66eb62f3cae59ed260ebb9075a32a04350f1" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.6+0" +version = "5.0.7+2" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "cbb7bdfca123d91205ba9341bbaabe700934078d" +git-tree-sha1 = "cf28501224f22b2b4d237d3cc7215c7c0cb52f6a" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "9.9.1+1" +version = "9.9.2+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1827,21 +1859,21 @@ version = "1.4.3" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" +git-tree-sha1 = "a9697f1d06cc3eb3fb3ad49cc67f2cfabaac31ea" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.15+1" +version = "3.0.16+0" [[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" +version = "0.5.6+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64" +deps = ["Compat", "EnumX", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "31b3b1b8e83ef9f1d50d74f1dd5f19a37a304a1f" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.10.0" +version = "1.12.0" [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" @@ -1856,9 +1888,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.3+0" [[deps.OrderedCollections]] -git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" +git-tree-sha1 = "cc4054e898b852042d7b503313f7ad03de99c3dd" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.7.0" +version = "1.8.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1867,9 +1899,9 @@ version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "949347156c25054de2db3b166c52ac4728cbad65" +git-tree-sha1 = "48566789a6d5f6492688279e22445002d171cf76" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.31" +version = "0.11.33" [[deps.PETSc]] deps = ["Libdl", "LinearAlgebra", "MPI", "MPIPreferences", "PETSc_jll", "Pkg", "SparseArrays"] @@ -1885,9 +1917,9 @@ version = "3.22.0+0" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] -git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" +git-tree-sha1 = "cf181f0b1e6a18dfeb0ee8acc4a9d1672499626c" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" -version = "0.4.3" +version = "0.4.4" [[deps.PackageExtensionCompat]] git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" @@ -1909,9 +1941,9 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801" +git-tree-sha1 = "3b31172c032a1def20c98dae3f2cdc9d10e3b561" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.54.1+0" +version = "1.56.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1927,14 +1959,18 @@ version = "2.8.1" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +git-tree-sha1 = "db76b1ecd5e9715f3d043cec13b2ec93ce015d53" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.43.4+0" +version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1962,9 +1998,9 @@ version = "0.7.16" [[deps.PolyesterForwardDiff]] deps = ["ForwardDiff", "Polyester"] -git-tree-sha1 = "5cd736337b9dc0de9bfe894f067f300274fceab1" +git-tree-sha1 = "72365df717fae8dcbbb02d8704ebeb0f2dbf2e39" uuid = "98d1487c-24ca-40b6-b7ab-df2af84e126b" -version = "0.1.2" +version = "0.1.3" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1983,18 +2019,6 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" -[[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" -uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.24" - - [deps.PreallocationTools.extensions] - PreallocationToolsReverseDiffExt = "ReverseDiff" - - [deps.PreallocationTools.weakdeps] - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -2015,28 +2039,29 @@ version = "2.4.0" [[deps.Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" +git-tree-sha1 = "25cdd1d20cd005b52fc12cb6be3f75faaf59bb9b" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.6" +version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" +git-tree-sha1 = "13c5103482a8ed1536a54c08d0e742ae3dca2d42" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.2" +version = "1.10.4" [[deps.PtrArrays]] -git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f" +git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.2.1" +version = "1.3.0" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -2046,21 +2071,23 @@ version = "1.0.1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" +git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.1" +version = "2.11.2" weakdeps = ["Enzyme"] [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Random123]] deps = ["Random", "RandomNumbers"] @@ -2097,9 +2124,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "32f824db4e5bab64e25a12b22483a30a6b813d08" +git-tree-sha1 = "112c876cee36a5784df19098b55db2b238afc36a" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.4" +version = "3.31.2" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2148,9 +2175,9 @@ version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" +version = "1.3.1" [[deps.ResettableStacks]] deps = ["StaticArrays"] @@ -2205,9 +2232,9 @@ version = "0.7.0" [[deps.SIMD]] deps = ["PrecompileTools"] -git-tree-sha1 = "52af86e35dd1b177d051b12681e1c581f53c281b" +git-tree-sha1 = "fea870727142270bdf7624ad675901a1ee3b4c87" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.7.0" +version = "3.7.1" [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" @@ -2227,23 +2254,25 @@ uuid = "322a6be2-4ae8-5d68-aaf1-3e960788d1d9" version = "0.2.0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "f48e0239fbb7799e8d81133ea71a726ec510c9ef" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "d1fea0667570b46bc984da28315519d1c42023f9" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.65.1" +version = "2.82.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" + SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"] [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" @@ -2259,15 +2288,15 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "f66048bb969e67bd7d1bdd03cd0b81219642bbd0" +git-tree-sha1 = "15634a7c06849c6871a3a2391346d48ef3ba0fbe" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.1" +version = "0.1.2" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "6149620767866d4b0f0f7028639b6e661b6a1e44" +git-tree-sha1 = "1c4b7f6c3e14e6de0af66e66b86d525cae10ecb4" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.12" +version = "0.3.13" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2276,9 +2305,9 @@ weakdeps = ["SparseArrays", "StaticArraysCore"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "0444a37a25fab98adbd90baa806ee492a3af133a" +git-tree-sha1 = "566c4ed301ccb2a44cbd5a27da5f885e0ed1d5df" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.6.1" +version = "1.7.0" [[deps.Scratch]] deps = ["Dates"] @@ -2288,22 +2317,24 @@ version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" +version = "1.1.2" [[deps.ShaderAbstractions]] -deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8" +deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays"] +git-tree-sha1 = "818554664a2e01fc3784becb2eb3a82326a604b6" uuid = "65257c39-d410-5151-9873-9b3e5be5013e" -version = "0.4.1" +version = "0.5.0" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2324,9 +2355,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "f7e2042e0b68c6bb19a0a1594839792737f51d84" +git-tree-sha1 = "a65e81385d9c45c6abe49d7676d71b07b5b6bbc1" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.0.0" +version = "2.2.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2354,6 +2385,7 @@ version = "0.1.3" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SoftGlobalScope]] deps = ["REPL"] @@ -2370,13 +2402,13 @@ version = "1.2.1" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "010b3c44301805d1ede9159f449a351d61172aa6" +git-tree-sha1 = "9603842a7a68464a066b5754e89fc7f810db8ae7" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.9" +version = "0.6.15" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -2394,9 +2426,9 @@ version = "0.6.9" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "b906758c107b049b6b71599b9f928d9b14e5554a" +git-tree-sha1 = "59bad850b1fc622051bf80a2be86c95b487e0243" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.23.0" +version = "2.24.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2413,26 +2445,24 @@ version = "2.23.0" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SparseMatrixColorings]] -deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "76b44c879661552d64f382acf66faa29ab56b3d9" +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "3abb70c9055dd01344fe2992b7909928ab60c1c5" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.10" -weakdeps = ["Colors"] +version = "0.4.17" [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" + [deps.SparseMatrixColorings.weakdeps] + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "2f5d4697f21388cbe1ff299430dd169ef97d7e14" +git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.4.0" +version = "2.5.0" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2458,9 +2488,9 @@ version = "0.1.1" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] -git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" +git-tree-sha1 = "f737d444cb0ad07e61b3c1bef8eb91203c321eff" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.1.1" +version = "1.2.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] @@ -2475,9 +2505,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "777657803913ffc7e8cc20f0fd04b634f871af8f" +git-tree-sha1 = "0feb6b9031bd5c51f9072393eb5ab3efd31bf9e4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.8" +version = "1.9.13" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2490,9 +2520,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.3" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2501,16 +2536,16 @@ uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" version = "1.7.0" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" +deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "29321314c920c26684834965ec2ce0dacc9cf8e5" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.3" +version = "0.34.4" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" +git-tree-sha1 = "35b09e80be285516e52c9054792c884b9216ae3c" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.2" +version = "1.4.0" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -2531,15 +2566,15 @@ version = "0.3.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" +git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.0" +version = "0.4.1" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10" +git-tree-sha1 = "8ad2e38cbb812e29348719cc63580ec1dfeb9de4" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.21" +version = "0.7.1" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2561,6 +2596,10 @@ git-tree-sha1 = "c581be48ae1cbf83e899b14c07a807e1787512cc" uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" version = "0.3.1" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2568,25 +2607,25 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"] -git-tree-sha1 = "56661ac133ea6df96fea8d6bb4eb18875b002206" +git-tree-sha1 = "c135b599cec3558be36eaf86ab1ce7e259ef9534" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "4.26.1" +version = "4.27.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"] -git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305" +git-tree-sha1 = "91db7ed92c66f81435fe880947171f1212936b14" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" -version = "5.2.2+0" +version = "5.2.3+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "6c6761e08bf5a270905cdd065be633abfa1b155b" +git-tree-sha1 = "d6c04e26aa1c8f7d144e1a8c47f1c73d3013e289" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.35" +version = "0.3.38" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] @@ -2595,10 +2634,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper"] -git-tree-sha1 = "04e9157537ba51dad58336976f8d04b9ab7122f0" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "ExproniconLite", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] +git-tree-sha1 = "ca5929df933a8b7272bc7f01dcd14b2d976c56e2" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.7.2" +version = "3.25.1" [deps.SymbolicUtils.extensions] SymbolicUtilsLabelledArraysExt = "LabelledArrays" @@ -2609,10 +2648,10 @@ version = "3.7.2" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "ce9c95fc859007747a4faf10166201e0b10d4313" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "12a14cf31a2b05acd548965c435d4b4e4884b4ad" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.22.0" +version = "6.37.1" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" @@ -2652,6 +2691,11 @@ deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" +[[deps.TaskLocalValues]] +git-tree-sha1 = "d155450e6dff2a8bc2fcb81dcb194bd98b0aeb46" +uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34" +version = "0.1.2" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -2666,24 +2710,31 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +git-tree-sha1 = "18ad3613e129312fe67789a71720c3747e598a61" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.2" +version = "0.5.3" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "0248b1b2210285652fbc67fd6ced9bf0394bcfec" +git-tree-sha1 = "f21231b166166bebc73b99cea236071eb047525b" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.1" +version = "0.11.3" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf" +git-tree-sha1 = "f57facfd1be61c42321765d3551b3df50f7e09f6" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.25" +version = "0.5.28" + + [deps.TimerOutputs.extensions] + FlameGraphsExt = "FlameGraphs" + + [deps.TimerOutputs.weakdeps] + FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -2708,13 +2759,14 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "cbbebadbcc76c5ca1cc4b4f3b0614b3e603b5000" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.5.2" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2723,6 +2775,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2732,9 +2785,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "01915bfcd62be15329c9a07235447a89d588327c" +git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.21.1" +version = "1.22.0" weakdeps = ["ConstructionBase", "InverseFunctions"] [deps.Unitful.extensions] @@ -2764,6 +2817,11 @@ git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.2.0" +[[deps.WeakValueDicts]] +git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" +uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" +version = "0.1.0" + [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] git-tree-sha1 = "092217eb5443926d200ae9325f103906efbb68b1" @@ -2784,75 +2842,75 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6" +git-tree-sha1 = "b8b243e47228b4a3877f1dd6aee0c5d56db7fcf4" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.5+0" +version = "2.13.6+1" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191" +git-tree-sha1 = "82df486bfc568c29de4a207f7566d6716db6377c" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.42+0" +version = "1.1.43+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "15e637a697345f6743674f1322beefbc5dcd5cfc" +git-tree-sha1 = "fee71455b0aaa3440dfdd54a9a36ccef829be7d4" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.3+0" +version = "5.8.1+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+1" +version = "1.8.6+3" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "2b0e27d52ec9d8d483e2ca0b72b3cb1a8df5c27a" +git-tree-sha1 = "e9216fdcd8514b7072b43653874fd688e4c6c003" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.11+1" +version = "1.0.12+0" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "02054ee01980c90297412e4c809c8694d7323af3" +git-tree-sha1 = "89799ae67c17caa5b3b5a19b8469eeee474377db" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.4+1" +version = "1.1.5+0" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.6+1" +version = "1.3.6+3" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" +git-tree-sha1 = "a490c6212a0e90d2d55111ac956f7c4fa9c277a6" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.11+0" +version = "0.9.11+1" [[deps.Xorg_libpthread_stubs_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "fee57a273563e273f0f53275101cd41a8153517a" +git-tree-sha1 = "c57201109a9e4c0585b208bb408bc41d205ac4e9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.1+1" +version = "0.1.2+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+1" +version = "1.17.0+3" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b9ead2d2bdb27330545eb14234a2e300da61232e" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.0+1" +version = "1.6.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" +git-tree-sha1 = "b46894beba6c05cd185d174654479aaec09ea6b1" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.12" +version = "0.4.13" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] @@ -2862,9 +2920,9 @@ version = "1.4.0" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] -git-tree-sha1 = "f02ce8f0fda1ed40f4d0d59a2ad05e35e8ac9b0e" +git-tree-sha1 = "766d90db2817565b667c1cc9cc420d668f2e8dba" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.5+1" +version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -2873,15 +2931,15 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "555d1076590a6cc2fdee2ef1469451f872d8b41b" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+1" +version = "1.5.7+1" [[deps.cminpack_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4914f5bc10179ca652137b6cd27e1eb930a17a18" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "720469d4732c660ef6b38bf0449a2db0f5de2462" uuid = "b792d7bf-f512-5dba-8a02-6d8084434f1d" -version = "1.3.8+0" +version = "1.3.11+0" [[deps.isoband_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2891,9 +2949,9 @@ version = "0.2.3+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1827acba325fdcdf1d2647fc8d5301dd9ba43a9d" +git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.9.0+0" +version = "3.11.0+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2914,9 +2972,9 @@ version = "2.0.3+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" +git-tree-sha1 = "068dfe202b0a05b8332f1e8e6b4080684b9c7700" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.44+0" +version = "1.6.47+0" [[deps.libsass_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2925,16 +2983,16 @@ uuid = "47bcb7c8-5119-555a-9eeb-0afcc36cd728" version = "3.6.6+0" [[deps.libsixel_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df" +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] +git-tree-sha1 = "c1733e347283df07689d71d61e14be986e49e47a" uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+1" +version = "1.10.5+0" [[deps.libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f76d682d87eefadd3f165d8d9fda436464213142" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+1" +version = "1.0.21+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] @@ -2944,20 +3002,20 @@ version = "1.3.7+2" [[deps.libwebp_jll]] deps = ["Artifacts", "Giflib_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libglvnd_jll", "Libtiff_jll", "libpng_jll"] -git-tree-sha1 = "ccbb625a89ec6195856a50aa2b668a5c08712c94" +git-tree-sha1 = "d2408cac540942921e7bd77272c32e58c33d8a77" uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" -version = "1.4.0+0" +version = "1.5.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" +version = "2022.0.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] @@ -2966,9 +3024,9 @@ version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "35976a1216d6c066ea32cba2150c4fa682b276fc" +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "10164.0.0+0" +version = "10164.0.1+0" [[deps.x265_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/NonlinearProblem/bruss.jmd b/benchmarks/NonlinearProblem/bruss.jmd index 7b1817bdd..bbf09e91c 100644 --- a/benchmarks/NonlinearProblem/bruss.jmd +++ b/benchmarks/NonlinearProblem/bruss.jmd @@ -155,7 +155,7 @@ function cache_and_compute_10_jacobians(adtype, f!::F, y, x, p) where {F} return J end -Ns = [2^i for i in 1:7] +Ns = [2^i for i in 1:4] adtypes = [ ( @@ -210,7 +210,7 @@ adtypes = [ times = Matrix{Float64}(undef, length(Ns), length(adtypes)) for (i, N) in enumerate(Ns) - @info N + str = "$(lpad(N, 10)) " test_problem = generate_brusselator_problem(N) bruss_f! = test_problem.f u0 = test_problem.u0 @@ -222,8 +222,9 @@ for (i, N) in enumerate(Ns) $(adtype), $(bruss_f!), $(y), $(u0), $(test_problem.p) ) end - @info times[i, j] + str = str * "$(lpad(times[i, j], 16))" end + println(str) end ``` @@ -250,7 +251,7 @@ fig = begin xtickwidth=2.5, ytickwidth=2.5, spinewidth=2.5, yreversed=true) spy!(ax, J_; markersize=1, marker=:circle, framecolor=:lightgray, - colormap=:seaborn_bright) + colormap=:tableau_20) ax = Axis(fig[1, 2]; title="Scaling of Sparse Jacobian Computation", titlesize=22, titlegap=10, xscale=log10, yscale=log10, @@ -259,7 +260,7 @@ fig = begin xlabel=L"Input Dimension ($\mathbf{N}$)", ylabel=L"Time $\mathbf{(s)}$", xlabelsize=22, ylabelsize=22, yaxisposition=:right) - colors = cgrad(:seaborn_bright, length(adtypes); categorical=true) + colors = cgrad(:tableau_20, length(adtypes); categorical=true) line_list = [] scatter_list = [] @@ -359,19 +360,19 @@ solvers_scaling = [ (; pkg = :wrapper, sparsity = :none, name = "NR [NLsolve.jl]", alg = NLsolveJL(; method = :newton, autodiff = :forward)), (; pkg = :wrapper, sparsity = :none, name = "Mod. NR [Sundials]", alg = KINSOL()), (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (No Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), - (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (Approx. Local Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), - (; pkg = :wrapper, sparsity = :none, name = "NR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), + (; pkg = :wrapper, sparsity = :exact, name = "NR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtonls")), (; pkg = :nonlinearsolve, sparsity = :none, name = "TR (No Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), (; pkg = :nonlinearsolve, sparsity = :exact, name = "TR (Exact Sparsity)", alg = TrustRegion(; radius_update_scheme = RUS.NLsolve)), (; pkg = :wrapper, sparsity = :none, name = "TR [NLsolve.jl]", alg = NLsolveJL(; autodiff = :forward)), (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (No Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), - (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (Approx. Local Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), - (; pkg = :wrapper, sparsity = :none, name = "TR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), + (; pkg = :wrapper, sparsity = :exact, name = "TR [PETSc] (Exact Sparsity)", alg = PETScSNES(; snes_type = "newtontr")), (; pkg = :wrapper, sparsity = :none, name = "Mod. Powell [MINPACK]", alg = CMINPACK()), ] +GC.enable(false) # for PETSc + runtimes_scaling = fill(-1.0, length(solvers_scaling), length(Ns)) for (i, N) in enumerate(Ns) @@ -441,7 +442,7 @@ fig = begin STROKEWIDTH = 2.5 cycle = Cycle([:marker], covary = true) - colors = cgrad(:seaborn_bright, length(solvers_scaling); categorical = true) + colors = cgrad(:tableau_20, length(solvers_scaling); categorical = true) theme = Theme(Lines = (cycle = cycle,), Scatter = (cycle = cycle,)) LINESTYLES = Dict( (:nonlinearsolve, :none) => :solid, @@ -619,7 +620,7 @@ fig = begin STROKEWIDTH = 2.5 cycle = Cycle([:marker], covary = true) - colors = cgrad(:seaborn_bright, length(solvers_scaling_jacobian_free); categorical = true) + colors = cgrad(:tableau_20, length(solvers_scaling_jacobian_free); categorical = true) theme = Theme(Lines = (cycle = cycle,), Scatter = (cycle = cycle,)) LINESTYLES = Dict( (:nonlinearsolve, :none) => :solid, @@ -765,7 +766,7 @@ fig = begin HEIGHT = round(Int, WIDTH * ASPECT_RATIO) STROKEWIDTH = 2.5 - colors = cgrad(:seaborn_bright, length(successful_solvers); categorical = true) + colors = cgrad(:tableau_20, length(successful_solvers); categorical = true) cycle = Cycle([:marker], covary = true) plot_theme = Theme(Lines = (; cycle), Scatter = (; cycle))