Dockerfile_r

# Copyright (c) Jupyter Development Team.
# Distributed under the terms of the Modified BSD License.
FROM jupyter/minimal-notebook

LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>"

USER root

# R pre-requisites # libav-tools does not exist anymore
RUN apt-get update && \
    apt-get install -y --no-install-recommends \
    fonts-dejavu \
    tzdata \
    gfortran \
    gcc && apt-get clean && \
    rm -rf /var/lib/apt/lists/*

USER $NB_UID

# R packages
RUN conda install --quiet --yes \
    'r-base=3.3.2' \
    'r-irkernel=0.7*' \
    'r-plyr=1.8*' \
    'r-devtools=1.12*' \
    'r-tidyverse=1.0*' \
    'r-shiny=0.14*' \
    'r-rmarkdown=1.2*' \
    'r-forecast=7.3*' \
    'r-rsqlite=1.1*' \
    'r-reshape2=1.4*' \
    'r-nycflights13=0.2*' \
    'r-caret=6.0*' \
    'r-rcurl=1.95*' \
    'r-crayon=1.3*' \
    'r-randomforest=4.6*' \
    'r-hexbin=1.27*' && \
    conda clean -tipsy && \
    fix-permissions $CONDA_DIR

#python
RUN conda install --quiet --yes \
    'nomkl' \
    'ipywidgets=7.1*' \
    'pandas=0.19*' \
    'numexpr=2.6*' \
    'matplotlib=2.0*' \
    'scipy=0.19*' \
    'seaborn=0.7*' \
    'scikit-learn=0.18*' \
    'scikit-image=0.12*' \
    'sympy=1.0*' \
    'cython=0.25*' \
    'patsy=0.4*' \
    'statsmodels=0.8*' \
    'cloudpickle=0.2*' \
    'dill=0.2*' \
    'numba=0.31*' \
    'bokeh=0.12*' \
    'sqlalchemy=1.1*' \
    'hdf5=1.8.17' \
    'h5py=2.6*' \
    'vincent=0.4.*' \
    'beautifulsoup4=4.5.*' \
    'protobuf=3.*' \
    'xlrd'  && \
    conda remove --quiet --yes --force qt pyqt && \
    conda clean -tipsy && \
    # Activate ipywidgets extension in the environment that runs the notebook server
    jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
    # Also activate ipywidgets extension for JupyterLab
    jupyter labextension install @jupyter-widgets/jupyterlab-manager@^0.33.1 && \
    npm cache clean && \
    rm -rf $CONDA_DIR/share/jupyter/lab/staging && \
    rm -rf /home/$NB_USER/.cache/yarn && \
    rm -rf /home/$NB_USER/.node-gyp && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

# Install facets which does not have a pip or conda package at the moment
RUN cd /tmp && \
    git clone https://github.com/PAIR-code/facets.git && \
    cd facets && \
    jupyter nbextension install facets-dist/ --sys-prefix && \
    rm -rf facets && \
    fix-permissions $CONDA_DIR && \
    fix-permissions /home/$NB_USER

# Import matplotlib the first time to build the font cache.
ENV XDG_CACHE_HOME /home/$NB_USER/.cache/

USER $NB_UID
# RUN pip install --quiet --yes \
#     'nbgitpuller==1.2.*' \
#     'jupytext==1.16.*'
RUN MPLBACKEND=Agg python -c "import matplotlib.pyplot" && \
    fix-permissions /home/$NB_USER