CI.yaml

name: CI

on:
  # GitHub has started calling new repo's first branch "main" https://github.com/github/renaming
  # Existing codes likely still have "master" as the primary branch
  # Both are tracked here to keep legacy and new codes working
  push:
    branches:
      - "*"
      - "**"
  pull_request:
    branches:
      - "master"
      - "develop"
  schedule:
    # Nightly tests run on master by default:
    #   Scheduled workflows run on the latest commit on the default or base branch.
    #   (from https://help.github.com/en/actions/reference/events-that-trigger-workflows#scheduled-events-schedule)
    - cron: "0 0 * * *"

jobs: 
  test:
    name: Test on ${{ matrix.os }}, Python ${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.8', '3.9', '3.10']

    steps:
      - uses: actions/checkout@v4

      - name: Additional info about the build
        shell: bash
        run: |
          uname -a
          df -h
          ulimit -a

      # More info on options: https://github.com/conda-incubator/setup-miniconda
      - uses: conda-incubator/setup-miniconda@v3
        with:
          python-version: ${{ matrix.python-version }}
          environment-file: devtools/conda-envs/test_env.yaml
          activate-environment: test
          auto-update-conda: false
          auto-activate-base: false
          show-channel-urls: true
          condarc: |
            channels:
              - conda-forge
          create-args: >-
            python=${{ matrix.python-version }}

      - name: Testing Dependencies
        shell: bash -l {0}
        run: |
          python -m pip install -U pytest pytest-cov codecov
        
      - name: Install package
        # conda setup requires this special shell
        shell: bash -l {0}
        run: |
          python -m pip install -e . --no-deps -vvv
          conda list
        
      - name: Run tests
        shell: bash -l {0}
        run: |
          ls -a despasito/equations_of_state/saft/compiled_modules
          pytest -vvv --cov=despasito --cov-report=xml --color=yes despasito/tests/

      - name: CodeCov
        uses: codecov/codecov-action@v1
        with:
          file: ./coverage.xml
          flags: unittests
          name: codecov-${{ matrix.os }}-py${{ matrix.python-version }}

      - name: Flake8
        shell: bash -l {0}
        run: |
          python -m flake8 despasito --count --ignore=E741,W503 --max-line-length=92 --show-source --statistics

  paper:
    runs-on: ubuntu-latest
    name: Paper Draft
    steps:
      - name: Checkout
        uses: actions/checkout@v4
      - name: Build draft PDF
        uses: openjournals/openjournals-draft-action@master
        with:
          journal: joss
          # This should be the path to the paper within your repo.
          paper-path: paper/paper.md
      - name: Upload
        uses: actions/upload-artifact@v3
        with:
          name: paper
          # This is the output path where Pandoc will write the compiled
          # PDF. Note, this should be the same directory as the input
          # paper.md
          path: paper/paper.pdf