diff --git a/app/src/main/cpp/artic-native-lib.cpp b/app/src/main/cpp/artic-native-lib.cpp
index 51103fcd..337f3a5e 100644
--- a/app/src/main/cpp/artic-native-lib.cpp
+++ b/app/src/main/cpp/artic-native-lib.cpp
@@ -79,7 +79,7 @@ void resetOptInd() {
 }
 
 extern "C" JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
   // try{TODO:exceptions
   // Convert command to cpp
   //TODO:casting not good
@@ -155,7 +155,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstri
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   outfile = env->GetStringUTFChars(pipe_path, nullptr);
 
   int out = mkfifo(outfile, 0664);
@@ -168,7 +168,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobje
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   fprintf(stderr, FILE_CLOSE_TAG);
   fflush(stderr);
   close(fdo);
diff --git a/app/src/main/cpp/consensus-native-lib.cpp b/app/src/main/cpp/consensus-native-lib.cpp
index bd272271..0b0ce4db 100644
--- a/app/src/main/cpp/consensus-native-lib.cpp
+++ b/app/src/main/cpp/consensus-native-lib.cpp
@@ -77,7 +77,7 @@ void resetOptInd() {
 }
 
 extern "C" JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
   // try{TODO:exceptions
   // Convert command to cpp
   //TODO:casting not good
@@ -145,7 +145,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstri
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   outfile = env->GetStringUTFChars(pipe_path, nullptr);
 
   int out = mkfifo(outfile, 0664);
@@ -158,7 +158,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobje
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   fprintf(stderr, FILE_CLOSE_TAG);
   fflush(stderr);
   close(fdo);
diff --git a/app/src/main/cpp/methylation-native-lib.cpp b/app/src/main/cpp/methylation-native-lib.cpp
index dffa24a6..dceef923 100644
--- a/app/src/main/cpp/methylation-native-lib.cpp
+++ b/app/src/main/cpp/methylation-native-lib.cpp
@@ -77,7 +77,7 @@ void resetOptInd() {
 }
 
 extern "C" JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
   // try{TODO:exceptions
   // Convert command to cpp
   //TODO:casting not good
@@ -146,7 +146,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstri
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   outfile = env->GetStringUTFChars(pipe_path, nullptr);
 
   int out = mkfifo(outfile, 0664);
@@ -159,7 +159,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobje
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   fprintf(stderr, FILE_CLOSE_TAG);
   fflush(stderr);
   close(fdo);
diff --git a/app/src/main/cpp/single-tool-native-lib.cpp b/app/src/main/cpp/single-tool-native-lib.cpp
index 3dab2064..985937d3 100644
--- a/app/src/main/cpp/single-tool-native-lib.cpp
+++ b/app/src/main/cpp/single-tool-native-lib.cpp
@@ -77,7 +77,7 @@ void resetOptInd() {
 }
 
 extern "C" JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
   // try{TODO:exceptions
   // Convert command to cpp
   //TODO:casting not good
@@ -186,7 +186,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstri
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   outfile = env->GetStringUTFChars(pipe_path, nullptr);
 
   int out = mkfifo(outfile, 0664);
@@ -199,7 +199,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobje
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   fprintf(stderr, FILE_CLOSE_TAG);
   fflush(stderr);
   close(fdo);
diff --git a/app/src/main/cpp/variant-native-lib.cpp b/app/src/main/cpp/variant-native-lib.cpp
index 9023122c..aba61dd5 100644
--- a/app/src/main/cpp/variant-native-lib.cpp
+++ b/app/src/main/cpp/variant-native-lib.cpp
@@ -78,7 +78,7 @@ void resetOptInd() {
 }
 
 extern "C" JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_init(JNIEnv *env, jobject, jstring command, jint command_id) {
   // try{TODO:exceptions
   // Convert command to cpp
   //TODO:casting not good
@@ -147,7 +147,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_init(JNIEnv *env, jobject, jstri
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_startPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   outfile = env->GetStringUTFChars(pipe_path, nullptr);
 
   int out = mkfifo(outfile, 0664);
@@ -160,7 +160,7 @@ Java_com_mobilegenomics_f5n_core_NativeCommands_startPipeline(JNIEnv *env, jobje
 
 extern "C"
 JNIEXPORT jint JNICALL
-Java_com_mobilegenomics_f5n_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
+Java_com_mobilegenomics_genopo_core_NativeCommands_finishPipeline(JNIEnv *env, jobject thiz, jstring pipe_path) {
   fprintf(stderr, FILE_CLOSE_TAG);
   fflush(stderr);
   close(fdo);