README.md

Learning_RNA

This project records resources for RNA, which contains RNA biology (RNA structure and function), RNA-seq analysis, and RNA-related ML/DL.

Table of content

• RNA Structure

• RNA Function

• RNA-seq

• RNA-related Deep Learning

RNA Structure

一级结构

• [mRNA → protein] (https://www.bio.pku.edu.cn/data/upload/month_201210/2012_autumn-molecular_biology-06_cpPJcj.pdf)
• [ARES] (https://www.qbitai.com/2021/08/27997.html)

二级结构

• [RNA benchmarking] (https://arxiv.org/pdf/2410.16212)
  • [RNABERT] (https://cs230.stanford.edu/projects_fall_2022/reports/88.pdf)

三级结构

• [RhoFold+] (https://www.nature.com/articles/s41592-024-02487-0)
• [NuFold] (https://www.nature.com/articles/s41467-025-56261-7?fromPaywallRec=false)
• [Uni-RNA] (https://www.biorxiv.org/content/10.1101/2023.07.11.548588.abstract)

RNA Function

遗传信息载体

Benchmarking (https://arxiv.org/pdf/2406.10391)

RNA-Protein Binding Site

核酶、催化因子

非编码RNA

RNA-seq

Bulk RNA-seq

Pipeline

Practice

RNA-related ML/DL

Paper

Resources