Curate domains for all remaining ontologies (OBOFoundry#2115)

* Start annotating remaining domains

* Add more domains

* More curations

* Add more

* Curate remaining

* Update ontology/ev.md

* Update ontology/ogi.md

Author: cthoyt

ontology/aao.md

@@ -0,0 +1,31 @@
+"""Test data integrity, beyond what's possible with the JSON schema."""
+
+from pathlib import Path
+
+import yaml
+
+__all__ = [
+    "get_data",
+    "ONTOLOGY_DIRECTORY",
+]
+
+HERE = Path(__file__).parent.resolve()
+ROOT = HERE.parent.parent.resolve()
+ONTOLOGY_DIRECTORY = ROOT.joinpath("ontology").resolve()
+
+
+def get_data():
+    """Get ontology data."""
+    ontologies = {}
+    for path in ONTOLOGY_DIRECTORY.glob("*.md"):
+        with open(path) as file:
+            lines = [line.rstrip("\n") for line in file]
+
+        assert lines[0] == "---"
+        idx = min(i for i, line in enumerate(lines[1:], start=1) if line == "---")
+
+        # Load the data like it is YAML
+        data = yaml.safe_load("\n".join(lines[1:idx]))
+        data["long_description"] = "".join(lines[idx:])
+        ontologies[data["id"]] = data
+    return ontologies

ontology/adw.md

@@ -10,10 +10,10 @@
 import yaml
 
 from obofoundry.standardize_metadata import ModifiedDumper
+from obofoundry.utils import ONTOLOGY_DIRECTORY, get_data
 
 HERE = Path(__file__).parent.resolve()
 ROOT = HERE.parent
-ONTOLOGY_DIRECTORY = ROOT.joinpath("ontology").resolve()
 SCHEMA_PATH = ROOT.joinpath("util", "schema", "registry_schema.json")
 
 PUBMED_PREFIX = "https://www.ncbi.nlm.nih.gov/pubmed/"
@@ -25,23 +25,6 @@
 CHEMRXIV_DOI_PREFIX = "https://doi.org/10.26434/chemrxiv"
 
 
-def get_data():
-    """Get ontology data."""
-    ontologies = {}
-    for path in ONTOLOGY_DIRECTORY.glob("*.md"):
-        with open(path) as file:
-            lines = [line.rstrip("\n") for line in file]
-
-        assert lines[0] == "---"
-        idx = min(i for i, line in enumerate(lines[1:], start=1) if line == "---")
-
-        # Load the data like it is YAML
-        data = yaml.safe_load("\n".join(lines[1:idx]))
-        data["long_description"] = "".join(lines[idx:])
-        ontologies[data["id"]] = data
-    return ontologies
-
-
 class TestIntegrity(unittest.TestCase):
     """Test case for data integrity."""