From 7d4564a2f7cf1e0acf91220280fa451cc8ea7ad8 Mon Sep 17 00:00:00 2001 From: Beatriz Saldana Date: Wed, 6 Nov 2024 09:42:59 -0800 Subject: [PATCH] pre-commit oops --- .../biomarkers_unique_field_values.json | 2 +- .../generate_field_validation_lists.ipynb | 41 ++++--------------- .../pathology_unique_field_values.json | 2 +- 3 files changed, 9 insertions(+), 36 deletions(-) diff --git a/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/biomarkers_unique_field_values.json b/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/biomarkers_unique_field_values.json index 3fb90a07..25aac928 100644 --- a/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/biomarkers_unique_field_values.json +++ b/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/biomarkers_unique_field_values.json @@ -21,4 +21,4 @@ "female", "male" ] -} \ No newline at end of file +} diff --git a/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/generate_field_validation_lists.ipynb b/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/generate_field_validation_lists.ipynb index 379f0d2d..6b17e27c 100644 --- a/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/generate_field_validation_lists.ipynb +++ b/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/generate_field_validation_lists.ipynb @@ -16,7 +16,7 @@ }, { "cell_type": "code", - "execution_count": 23, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -48,7 +48,7 @@ }, { "cell_type": "code", - "execution_count": 24, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -78,36 +78,9 @@ }, { "cell_type": "code", - "execution_count": 25, + "execution_count": null, "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "\n", - "UPGRADE AVAILABLE\n", - "\n", - "A more recent version of the Synapse Client (4.6.0) is available. Your version (4.0.0) can be upgraded by typing:\n", - " pip install --upgrade synapseclient\n", - "\n", - "Python Synapse Client version 4.6.0 release notes\n", - "\n", - "https://python-docs.synapse.org/news/\n", - "\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Welcome, beatrizsaldana!\n", - "\n", - "INFO: 2024-11-05 14:19:07 | synapseclient_default | Welcome, beatrizsaldana!\n", - "\n" - ] - } - ], + "outputs": [], "source": [ "# Log into Synapse\n", "syn = utils._login_to_synapse()" @@ -115,7 +88,7 @@ }, { "cell_type": "code", - "execution_count": 26, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -129,7 +102,7 @@ }, { "cell_type": "code", - "execution_count": 27, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ @@ -141,7 +114,7 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": null, "metadata": {}, "outputs": [], "source": [ diff --git a/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/pathology_unique_field_values.json b/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/pathology_unique_field_values.json index 896d63ad..ebb6d16a 100644 --- a/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/pathology_unique_field_values.json +++ b/src/agoradatatools/great_expectations/gx/json_schemas/immunohisto/pathology_unique_field_values.json @@ -23,4 +23,4 @@ "female", "male" ] -} \ No newline at end of file +}