From 13ecbb941dc8db1234cdf3603f062d2782162ba7 Mon Sep 17 00:00:00 2001
From: Rob Campbell <git@raacampbell.com>
Date: Thu, 8 Dec 2022 22:09:39 +0000
Subject: [PATCH] update register call with new input arg

---
 btpytools/brainreg_bt.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/btpytools/brainreg_bt.py b/btpytools/brainreg_bt.py
index eb937ef..dec5c50 100644
--- a/btpytools/brainreg_bt.py
+++ b/btpytools/brainreg_bt.py
@@ -74,6 +74,7 @@ def main():
     # Run the registration using brainreg
     args, additional_images_downsample = cli.prep_registration(args)
 
+    # This is the registration function from brainreg
     register(
         atlas_name,
         args.orientation,
@@ -81,6 +82,7 @@ def main():
         args.brainreg_directory,
         args.voxel_sizes,
         arg_groups["NiftyReg registration backend options"],
+        arg_groups["Pre-processing options"],
         sort_input_file=args.sort_input_file,
         n_free_cpus=args.n_free_cpus,
         additional_images_downsample=additional_images_downsample,