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PyNeurActiv

Python module on neuronal activity: analysis tools and theoretical models.

Installation

This Python package requires:

  • a working installation of Python >= 2.7
  • numpy
  • scipy
  • matplotlib

Recommended additional packages are:

  • nngt for some functionalities
  • pandas for raster analysis

Open a terminal in the folder of your choice, then type

git clone https://github.com/SENeC-Initiative/PyNeurActiv.git
cd PyNeurActiv
export PYTHONPATH=$(pwd):$PYTHONPATH

otherwise you can also install it globally with pip

git clone https://github.com/SENeC-Initiative/PyNeurActiv.git
cd PyNeurActiv
sudo pip install -e .

The above commands will temporarily set your $PYTHONPATH. Add the appropriate path in your .bashrc to set the package permanently.

Package can then be imported in python using import PyNeurActiv or for short import PyNeurActiv as pna.