From fd93c386004a16ad4c7a087c56b364b3ea4b2f7e Mon Sep 17 00:00:00 2001 From: Dave Lawrence Date: Fri, 9 Aug 2024 15:04:40 +0930 Subject: [PATCH] Change default HGVS to biocommons - this will enable on Shariant test --- variantgrid/settings/components/default_settings.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/variantgrid/settings/components/default_settings.py b/variantgrid/settings/components/default_settings.py index b58508df3..7f9bbb0a1 100644 --- a/variantgrid/settings/components/default_settings.py +++ b/variantgrid/settings/components/default_settings.py @@ -406,7 +406,7 @@ GENERATED_DIR = os.path.join(MEDIA_ROOT, 'generated') -HGVS_DEFAULT_METHOD = "pyhgvs" # HGVSConverterType (any case) ie "pyhgvs", "biocommons_hgvs", "combo" +HGVS_DEFAULT_METHOD = "biocommons_hgvs" # HGVSConverterType (any case) ie "pyhgvs", "biocommons_hgvs", "combo" HGVS_MAX_REF_ALLELE_LENGTH = 10 # Set to 0 for "del" instead of "delC" etc HGVS_VALIDATE_REFSEQ_TRANSCRIPT_LENGTH = True HGVS_MAX_SEQUENCE_LENGTH = 50_000