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Getting the fresh devel and running #8

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RudoRoemer opened this issue Dec 12, 2020 · 5 comments
Open

Getting the fresh devel and running #8

RudoRoemer opened this issue Dec 12, 2020 · 5 comments

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@RudoRoemer
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Getting a fresh devel and running

aquarius tmp>python pdb2movie/pdb2movie.py 2B5E_FH.pdb

pdb2movie: cleaning the PDB file

Traceback (most recent call last):
File "pdb2movie/pdb2movie.py", line 128, in
clean_file=cleanpdb.cleanPDB(args,exec_folder)
File "/home/physics/phsht/tmp/pdb2movie/cleanpdb.py", line 96, in cleanPDB
inputfile=open(args.pdbfile[0],'r')
IOError: [Errno 2] No such file or directory: '2B5E_FH.pdb'

whle the previous version works. Is this an end-of-line error somewhere?

Originally posted by @RudoRoemer in #6 (comment)

james-panayis added a commit to james-panayis/pdb2movie that referenced this issue Dec 12, 2020
…h) by converting the pdbfile argument to the full path
@james-panayis
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This should now be fixed - it is now no-longer (incorrectly) assumed that the pdbfile's full path is given (see pull request #9 ) :)

RudoRoemer added a commit that referenced this issue Dec 12, 2020
fix issue #8 (crash when pdbfile is given as a relative path) by converting the pdbfile argument to the full path
@RudoRoemer
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More problems, see comments on the pull request.

@james-panayis
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james-panayis commented Dec 13, 2020

Should be fixed! See the latest pull request #10 .

@RudoRoemer
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All fixed. Thanks.

@james-panayis
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This can be closed now :)

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