From 0bb9525423823a7d5ac70fd5236a75c9c684b621 Mon Sep 17 00:00:00 2001 From: RoyCaitSith Date: Fri, 10 Nov 2023 16:53:42 -0700 Subject: [PATCH] update --- bash_scripts/copy_bash_profile | 101 +++++++++++++++++---------------- 1 file changed, 52 insertions(+), 49 deletions(-) diff --git a/bash_scripts/copy_bash_profile b/bash_scripts/copy_bash_profile index f66b9b8..d9ad8bd 100644 --- a/bash_scripts/copy_bash_profile +++ b/bash_scripts/copy_bash_profile @@ -31,18 +31,18 @@ module load perl module load grib module load ncview module load aws-cli/2.2.29 -module load intel-oneapi-compilers/2021.4.0 -module load openmpi/4.1.1 -module load netcdf-c/4.8.1 netcdf-fortran/4.5.3 -module load parallel-netcdf/1.12.2 -module load hdf5/1.10.7 +#module load intel-oneapi-compilers/2021.4.0 +#module load openmpi/4.1.1 +#module load netcdf-c/4.8.1 netcdf-fortran/4.5.3 +#module load parallel-netcdf/1.12.2 +#module load hdf5/1.10.7 -export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi" -export PATH="$NETCDF:$PATH" -export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH" -export HDF5="$HDF5_ROOT" -export PATH="$HDF5:$PATH" -export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" +#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi" +#export PATH="$NETCDF:$PATH" +#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH" +#export HDF5="$HDF5_ROOT" +#export PATH="$HDF5:$PATH" +#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" #export J="-j 8" #export WRF_EM_CORE="1" @@ -53,45 +53,15 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" # GSI V3.7 #module purge -#module load cmake/3.15.3 -#module load intel-oneapi-compilers/2021.4.0 intel-oneapi-mpi/2021.4.0 intel-oneapi-mkl/2022.0.2 hdf5 - -#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-impi" -#export PATH="$NETCDF:$PATH" -#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH" -#export HDF5="$HDF5_ROOT" -#export PATH="$HDF5:$PATH" -#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" - -# Environment for WRFPLUS, RTTOV, WRFDA, and DART -#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi" -#export PATH="$NETCDF:$PATH" -#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH" -#export HDF5="$HDF5_ROOT" -#export PATH="$HDF5:$PATH" -#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" - -#export WRFPLUS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/WRFPLUS" -#export RTTOV="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/rttov_12.1" - -# NCEPlibs -#export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software" -#export JASPER_INC="$DIR/grib2/include" -#export PNG_INC="$JASPER_INC" - -# UPP -#export NCEPLIBS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/NCEPlibs" +module load cmake/3.15.3 +module load intel-oneapi-compilers/2021.4.0 intel-oneapi-mpi/2021.4.0 intel-oneapi-mkl/2022.0.2 hdf5 -# Environment for GFDL Vortex Tracker -#export PNETCDF=$PARALLEL_NETCDF_ROOT -#export PATH="$PNETCDF:$PATH" -#export LD_LIBRARY_PATH="$PNETCDF/lib:$LD_LIBRARY_PATH" -#export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software" -#export JASPERLIB="$DIR/grib2/lib" -#export JASPERINC="$DIR/grib2/include" -#export LIB_Z_PATH="$JASPERLIB" -#export LIB_PNG_PATH="$JASPERLIB" -#export LIB_JASPER_PATH="$JASPERLIB" +export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-impi" +export PATH="$NETCDF:$PATH" +export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH" +export HDF5="$HDF5_ROOT" +export PATH="$HDF5:$PATH" +export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" # GSI Github #module use /uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/hpc-stack/modulefiles/stack @@ -131,6 +101,25 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" #export FCFLAGS="-I$GSI_DIR/build/include $FCFLAGS" #export FCFLAGS="-I$HDF5/include $FCFLAGS" +# NCEPlibs +export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software" +export JASPER_INC="$DIR/grib2/include" +export PNG_INC="$JASPER_INC" + +# UPP +export NCEPLIBS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/NCEPlibs" + +# Environment for GFDL Vortex Tracker +export PNETCDF="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/PnetCDF" +export PATH="$PNETCDF:$PATH" +export LD_LIBRARY_PATH="$PNETCDF/lib:$LD_LIBRARY_PATH" +export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software" +export JASPERLIB="$DIR/grib2/lib" +export JASPERINC="$DIR/grib2/include" +export LIB_Z_PATH="$JASPERLIB" +export LIB_PNG_PATH="$JASPERLIB" +export LIB_JASPER_PATH="$JASPERLIB" + # Environment for installing HWRF #export DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software" #export SCRATCH="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/HWRF" @@ -156,6 +145,17 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" #export LIB_PNG_PATH="${JASPERLIB}" #export LIB_JASPER_PATH="${JASPERLIB}" +# Environment for WRFPLUS, RTTOV, WRFDA, and DART +#export NETCDF="/uufs/chpc.utah.edu/sys/spack/linux-rocky8-nehalem/intel-2021.4.0/netcdf-ompi" +#export PATH="$NETCDF:$PATH" +#export LD_LIBRARY_PATH="$NETCDF/lib:$LD_LIBRARY_PATH" +#export HDF5="$HDF5_ROOT" +#export PATH="$HDF5:$PATH" +#export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" + +#export WRFPLUS_DIR="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/WRFPLUS" +#export RTTOV="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/DART/rttov_12.1" + # ECMWF #export ECMWF_API_URL="https://api.ecmwf.int/v1" #export ECMWF_API_KEY="f0e9e36bd2c4ce37ff7b84c9ae29aa5b" @@ -168,3 +168,6 @@ export LD_LIBRARY_PATH="$HDF5/lib:$LD_LIBRARY_PATH" # Miniconda3 export PATH="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/mymini3/bin:$PATH" export PYTHONPATH="$HOME/climetlab-my-plugin/functions:$PYTHONPATH" + +# git-lfs +export PATH="/uufs/chpc.utah.edu/common/home/zpu-group30/cfeng/software/git-lfs-3.4.0/bin:$PATH"