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agri-schemas.ttl
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@prefix : <http://agrischemas.org/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix oa: <http://www.w3.org/ns/oa#> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix owl: <https://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix sio: <http://semanticscience.org/resource/> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix agri: <http://agrischemas.org/> .
@prefix ppeo: <http://purl.org/ppeo/PPEO.owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix schema: <http://schema.org/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix bioschema: <http://bioschemas.org/> .
@prefix metaSchema: <https://meta.schema.org/> .
@base <http://agrischemas.org/> .
<http://agrischemas.org/> rdf:type owl:Ontology ;
rdfs:label "AgriSchemas Ontology"@en .
#################################################################
# Annotation properties
#################################################################
### http://agrischemas.org/BioSchemasNewPropertyProposal
agri:BioSchemasNewPropertyProposal rdf:type owl:AnnotationProperty .
### http://agrischemas.org/SchemaNewPropertyProposal
agri:SchemaNewPropertyProposal rdf:type owl:AnnotationProperty .
### http://agrischemas.org/authorsList
agri:authorsList rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf dc:creator .
### http://agrischemas.org/baseCondition
agri:baseCondition rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
schema:Property .
### http://agrischemas.org/doiId
agri:doiId rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:SchemaNewPropertyProposal ,
schema:identifier .
### http://agrischemas.org/evidence
agri:evidence rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:SchemaNewPropertyProposal ,
oa:motivatedBy .
### http://agrischemas.org/foldChange
agri:foldChange rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
agri:score .
### http://agrischemas.org/hasExperimentalFactorType
agri:hasExperimentalFactorType rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
dc:type .
### http://agrischemas.org/hasExperimentalFactorValue
agri:hasExperimentalFactorValue rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal .
### http://agrischemas.org/hasGeneExpressionIn
agri:hasGeneExpressionIn rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
agri:isBiologicallyRelatedTo .
### http://agrischemas.org/hasObservedValue
agri:hasObservedValue rdf:type owl:AnnotationProperty ;
schema:inverseOf agri:hasObservedVariable ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ;
rdfs:range agri:StudyObservedValue ;
rdfs:domain agri:StudyObservedVariable .
### http://agrischemas.org/hasObservedVariable
agri:hasObservedVariable rdf:type owl:AnnotationProperty ;
schema:inverseOf agri:hasObservedValue ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
dc:type ;
rdfs:range agri:StudyObservedVariable ;
rdfs:domain agri:StudyObservedValue .
### http://agrischemas.org/isBiologicallyRelatedTo
agri:isBiologicallyRelatedTo rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
schema:Property .
### http://agrischemas.org/log2FoldChange
agri:log2FoldChange rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
agri:foldChange .
### http://agrischemas.org/ordinalTpm
agri:ordinalTpm rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
agri:score .
### http://agrischemas.org/pmedId
agri:pmedId rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:SchemaNewPropertyProposal ,
schema:identifier .
### http://agrischemas.org/pvalue
agri:pvalue rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
agri:score .
### http://agrischemas.org/score
agri:score rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
<http://meta.schema.org/Property> .
### http://agrischemas.org/timePoint
agri:timePoint rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
schema:Property .
### http://agrischemas.org/tpmCount
agri:tpmCount rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf agri:BioSchemasNewPropertyProposal ,
agri:score .
### http://meta.schema.org/Property
<http://meta.schema.org/Property> rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/creator
dc:creator rdf:type owl:AnnotationProperty .
### http://purl.org/dc/elements/1.1/type
dc:type rdf:type owl:AnnotationProperty .
### http://schema.org/Property
schema:Property rdf:type owl:AnnotationProperty .
### http://schema.org/alternateName
schema:alternateName rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf skos:altLabel .
### http://schema.org/description
schema:description rdf:type owl:AnnotationProperty .
### http://schema.org/domainIncludes
schema:domainIncludes rdf:type owl:AnnotationProperty .
### http://schema.org/hasPart
schema:hasPart rdf:type owl:AnnotationProperty .
### http://schema.org/identifier
schema:identifier rdf:type owl:AnnotationProperty .
### http://schema.org/inverseOf
schema:inverseOf rdf:type owl:AnnotationProperty .
### http://schema.org/name
schema:name rdf:type owl:AnnotationProperty ;
rdfs:subPropertyOf skos:prefLabel .
### http://schema.org/rangeIncludes
schema:rangeIncludes rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#altLabel
skos:altLabel rdf:type owl:AnnotationProperty .
### http://www.w3.org/2004/02/skos/core#prefLabel
skos:prefLabel rdf:type owl:AnnotationProperty .
### http://www.w3.org/ns/oa#motivatedBy
oa:motivatedBy rdf:type owl:AnnotationProperty .
#################################################################
# Classes
#################################################################
### http://agrischemas.org/BioPathway
agri:BioPathway rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:Action,
<http://purl.obolibrary.org/obo/GO_0008150>, # BioProc
<http://semanticscience.org/resource/SIO_001107> # Biological pathway
.
### http://agrischemas.org/BioSchemasNewClassProposal
agri:BioSchemasNewClassProposal rdf:type owl:Class .
### http://agrischemas.org/ExperimentalDesign
agri:ExperimentalDesign rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
obo:OBI_0500000 ,
ppeo:experimental_design ,
schema:PropertyValue ,
<http://www.ebi.ac.uk/efo/EFO_0001426> .
### http://agrischemas.org/ExperimentalFactorType
agri:ExperimentalFactorType rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal .
### http://agrischemas.org/ExperimentalFactorValue
agri:ExperimentalFactorValue rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
obo:OBI_0000750 ,
schema:PropertyValue ,
<http://www.ebi.ac.uk/efo/EFO_0000001> .
### http://agrischemas.org/FIeldTrialBioMaterial
agri:FIeldTrialBioMaterial rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:BioChemEntity .
### http://agrischemas.org/FieldTrialMaterialSource
agri:FieldTrialMaterialSource rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:BioChemEntity .
### http://agrischemas.org/FieldTrialObservationUnit
agri:FieldTrialObservationUnit rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:BioChemEntity .
### http://agrischemas.org/HostPathogenInteraction
agri:HostPathogenInteraction rdf:type owl:Class ;
rdfs:subClassOf
agri:BioSchemasNewClassProposal,
schema:Action,
# host-pathogen interaction
<http://purl.obolibrary.org/obo/OHPI_0000001>,
# biological process involved in symbiotic interaction
<http://purl.obolibrary.org/obo/GO_0044403.
.
### http://agrischemas.org/LabProtocolParameterType
agri:LabProtocolParameterType rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal .
### http://agrischemas.org/LabProtocolParameterValue
agri:LabProtocolParameterValue rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:PropertyValue .
### http://agrischemas.org/ScholarlyPublication
agri:ScholarlyPublication rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:CreativeWork .
### http://agrischemas.org/StudyEvent
agri:StudyEvent rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
schema:Action .
### http://agrischemas.org/StudyObservedValue
agri:StudyObservedValue rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal ,
ppeo:observed_variable ,
schema:PropertyValue .
### http://agrischemas.org/StudyObservedVariable
agri:StudyObservedVariable rdf:type owl:Class ;
rdfs:subClassOf agri:BioSchemasNewClassProposal .
### http://bioschemas.org/LabProtocol
bioschema:LabProtocol rdf:type owl:Class ;
rdfs:subClassOf agri:StudyEvent .
### http://purl.obolibrary.org/obo/OBI_0000750
obo:OBI_0000750 rdf:type owl:Class .
### http://purl.obolibrary.org/obo/OBI_0500000
obo:OBI_0500000 rdf:type owl:Class .
### http://purl.org/ppeo/PPEO.owl#experimental_design
ppeo:experimental_design rdf:type owl:Class .
### http://purl.org/ppeo/PPEO.owl#observed_variable
ppeo:observed_variable rdf:type owl:Class .
### http://schema.org/Action
schema:Action rdf:type owl:Class .
### http://schema.org/BioChemEntity
schema:BioChemEntity rdf:type owl:Class .
### http://schema.org/CreativeWork
schema:CreativeWork rdf:type owl:Class .
### http://schema.org/Intangible
schema:Intangible rdf:type owl:Class .
### http://schema.org/PropertyValue
schema:PropertyValue rdf:type owl:Class .
### http://schema.org/ScholarlyArticle
schema:ScholarlyArticle rdf:type owl:Class ;
rdfs:subClassOf agri:ScholarlyPublication .
### http://www.ebi.ac.uk/efo/EFO_0000001
<http://www.ebi.ac.uk/efo/EFO_0000001> rdf:type owl:Class .
### http://www.ebi.ac.uk/efo/EFO_0001426
<http://www.ebi.ac.uk/efo/EFO_0001426> rdf:type owl:Class .
### https://www.w3.org/2002/07/owl#AnnotationProperty
owl:AnnotationProperty rdf:type owl:Class .
### https://www.w3.org/2002/07/owl#Class
owl:Class rdf:type owl:Class .
### https://www.w3.org/2002/07/owl#NamedIndividual
owl:NamedIndividual rdf:type owl:Class .
### https://www.w3.org/2002/07/owl#Ontology
owl:Ontology rdf:type owl:Class .
#################################################################
# Individuals
#################################################################
### http://agrischemas.org/BioPathway
agri:BioPathway rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/BioSchemasNewClassProposal
agri:BioSchemasNewClassProposal rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/BioSchemasNewPropertyProposal
agri:BioSchemasNewPropertyProposal rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/BiologicalAssociation
agri:BiologicalAssociation rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/ExperimentalDesign
agri:ExperimentalDesign rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/ExperimentalFactorType
agri:ExperimentalFactorType rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/ExperimentalFactorValue
agri:ExperimentalFactorValue rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/FIeldTrialBioMaterial
agri:FIeldTrialBioMaterial rdf:type owl:NamedIndividual ,
owl:Class .
### http://agrischemas.org/FieldTrialMaterialSource
agri:FieldTrialMaterialSource rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/FieldTrialObservationUnit
agri:FieldTrialObservationUnit rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/HostPathogenInteraction
agri:HostPathogenInteraction rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/LabProtocolParameterType
agri:LabProtocolParameterType rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/LabProtocolParameterValue
agri:LabProtocolParameterValue rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/SchemaNewClassProposal
agri:SchemaNewClassProposal rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual ;
schema:description "Top-level containers named *New*Proposal are markers to track actions needed for new terms (eg, propose to schema/bioschemas)." .
### http://agrischemas.org/SchemaNewPropertyProposal
agri:SchemaNewPropertyProposal rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/ScholarlyPublication
agri:ScholarlyPublication rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/Soil
agri:Soil rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/StudyEvent
agri:StudyEvent rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/StudyObservedValue
agri:StudyObservedValue rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:Class ,
owl:NamedIndividual .
### http://agrischemas.org/authorsList
agri:authorsList rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/baseCondition
agri:baseCondition rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/doiId
agri:doiId rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/evidence
agri:evidence rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/foldChange
agri:foldChange rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/hasExperimentalFactorType
agri:hasExperimentalFactorType rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/hasExperimentalFactorValue
agri:hasExperimentalFactorValue rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/hasGeneExpressionIn
agri:hasGeneExpressionIn rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/interactionHost
agri:interactionHost rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/interactionPathogen
agri:interactionPathogen rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/isBiologicallyRelatedTo
agri:isBiologicallyRelatedTo rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/log2FoldChange
agri:log2FoldChange rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/ordinalTpm
agri:ordinalTpm rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/pmedId
agri:pmedId rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/pvalue
agri:pvalue rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/score
agri:score rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/timePoint
agri:timePoint rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://agrischemas.org/tpmCount
agri:tpmCount rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://bioschemas.org/BioChemEntity
bioschema:BioChemEntity rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://bioschemas.org/LabProtocol
bioschema:LabProtocol rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://meta.schema.org/Property
<http://meta.schema.org/Property> rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://purl.obolibrary.org/obo/OBI_0000750
obo:OBI_0000750 rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://purl.obolibrary.org/obo/OBI_0500000
obo:OBI_0500000 rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://purl.org/dc/elements/1.1/creator
dc:creator rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://purl.org/dc/elements/1.1/type
dc:type rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://purl.org/ppeo/PPEO.owl#experimental_design
ppeo:experimental_design rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://purl.org/ppeo/PPEO.owl#observed_variable
ppeo:observed_variable rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/Action
schema:Action rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/BioChemEntity
schema:BioChemEntity rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/CreativeWork
schema:CreativeWork rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/Intangible
schema:Intangible rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/Property
schema:Property rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/PropertyValue
schema:PropertyValue rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/ScholarlyArticle
schema:ScholarlyArticle rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://schema.org/abstract
schema:abstract rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/alternateName
schema:alternateName rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/description
schema:description rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/domainIncludes
schema:domainIncludes rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/hasPart
schema:hasPart rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/identifier
schema:identifier rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/inverseOf
schema:inverseOf rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/name
schema:name rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://schema.org/rangeIncludes
schema:rangeIncludes rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://www.ebi.ac.uk/efo/EFO_0000001
<http://www.ebi.ac.uk/efo/EFO_0000001> rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://www.ebi.ac.uk/efo/EFO_0001426
<http://www.ebi.ac.uk/efo/EFO_0001426> rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### http://www.w3.org/2000/01/rdf-schema#subClassOf
rdfs:subClassOf rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://www.w3.org/2004/02/skos/core#altLabel
skos:altLabel rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://www.w3.org/2004/02/skos/core#prefLabel
skos:prefLabel rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### http://www.w3.org/ns/oa#motivatedBy
oa:motivatedBy rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
### https://www.w3.org/2002/07/owl#AnnotationProperty
owl:AnnotationProperty rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### https://www.w3.org/2002/07/owl#Class
owl:Class rdf:type owl:NamedIndividual ,
owl:Class ,
owl:Class ,
owl:NamedIndividual .
### https://www.w3.org/2002/07/owl#NamedIndividual
owl:NamedIndividual rdf:type owl:NamedIndividual ,
owl:Class ,
owl:Class ,
owl:NamedIndividual .
### https://www.w3.org/2002/07/owl#Ontology
owl:Ontology rdf:type owl:NamedIndividual ,
owl:Class ,
owl:NamedIndividual .
### https://www.w3.org/2002/07/owl#equivalentClass
owl:equivalentClass rdf:type owl:NamedIndividual ,
owl:AnnotationProperty ,
owl:NamedIndividual .
[ rdf:type owl:Ontology
] .
[ rdf:type owl:Ontology
] .
[ rdf:type owl:Ontology
] .
#################################################################
# Annotations
#################################################################
agri:BioSchemasNewClassProposal rdfs:seeAlso agri:BioSchemasNewClassProposal .
agri:BioSchemasNewPropertyProposal rdfs:seeAlso agri:SchemaNewClassProposal .
agri:ExperimentalDesign schema:description """A description of the study's experimental design. For instance, \"control/treatment design\", \"factorial design with 2 factors\".
This is a a schema:PropertyValue and conventionally, schema:value should be used by instances to at least give a short description (or label) for a experimental design. schema:description could be optionally be used to additionally offer a longer description.
Until this becomes part of some official schema/bioschema specification, you might want to adopt some conventional redundancy, see https://github.com/Rothamsted/agri-schemas/tree/master/doc/miappe-use-case/dataset-arabidopsis for details."""@en .
agri:ExperimentalFactorType rdfs:seeAlso agri:ExperimentalFactorValue ;
schema:description """A variable that is considered to perform a study, such as a life science study. An experimental factor is the independent variable of the study, which might be varied as part of the experimental design for the purpose of investigating how potentially dependent variables vary with different factor values.
Examples are: treatmemt, administered diet, fertilisation."""@en .
agri:ExperimentalFactorValue rdfs:seeAlso agri:ExperimentalFactorType ;
schema:description "A value for an independent variable investigated by an experiment/study."@en .
agri:SchemaNewPropertyProposal rdfs:seeAlso agri:SchemaNewClassProposal .
agri:StudyEvent schema:description """An event that might happen during a study/experiment. This typically occurs to a sample or a data set/file, which yields another item (another sample or data file). Events are explicitly caused (eg, a lab protocol is applied, irrigation, patient treatment), or it might happen due to the environment (eg, rain, patient infection). Subclasses are defined for the two types of event.
Events can also be used to represent data extraction from samples (what is considered an assaying procedure in ISA-Tab), or data transformations (eg, normalisation, computation of differentially expressed genes, gene enrichment). An event of this type can represent a plan or a particular occurrence, ie, similarly to other cases in schema.org, we don't distinguish between the two, as it is done in BFO/DOLCE ontologies."""@en .
agri:baseCondition rdfs:seeAlso obo:OBI_0000143 ;
schema:rangeIncludes agri:ExperimentalFactorValue .
agri:foldChange dc:type obo:STATO_0000169 ,
sio:SIO_001078 ;
schema:rangeIncludes schema:Number .
agri:hasExperimentalFactorType schema:inverseOf agri:hasExperimentalFactorValue ;
schema:rangeIncludes agri:ExperimentalFactorType ;
schema:domainIncludes agri:ExperimentalFactorValue .
agri:hasExperimentalFactorValue schema:description "Links a factor value to its agri:ExperimentalFactorType. These properties are more specific subproperties of dc:type. You might have datasets where dc:type only is used to link factor values to their types. Ideally, use both maximise interoperability (see AgriSchemas documentation)."@en ;
schema:inverseOf agri:hasExperimentalFactorType ;
schema:domainIncludes agri:ExperimentalFactorType ;
schema:rangeIncludes agri:ExperimentalFactorValue .
agri:hasGeneExpressionIn rdfs:seeAlso obo:GO_0010467 ;
rdfs:comment "Associates an entity like a DNA sequence or protein to another entity like a sample or disease term, to tell that the former shows some (differential) gene expression upon the condition represented by the latter." .
agri:interactionHost schema:domainIncludes agri:HostPathogenInteraction ;
schema:rangeIncludes schema:Phenotype .
agri:interactionPathogen schema:domainIncludes agri:HostPathogenInteraction ;
schema:rangeIncludes schema:Phenotype .
agri:isBiologicallyRelatedTo rdfs:seeAlso sio:SIO_000897 .
agri:log2FoldChange dc:type sio:SIO_001078 ,
obo:STATO_0000169 .
agri:ordinalTpm rdfs:comment "The ordinal ('low', 'medium', 'high') level of TPM. This is established from the TPM count, using the EBI thresholds: [0.5-10]/low, [11-1000] med, >1000. See: See: https://rna-seqblog.com/rpkm-fpkm-and-tpm-clearly-explained/" ;
schema:rangeIncludes schema:Text ;
rdfs:seeAlso agri:tpmCount ;
rdfs:label "TPM level" .
agri:pvalue schema:rangeIncludes schema:Number ;
dc:type obo:OBI_0000175 ,
sio:SIO_000765 .
agri:score schema:rangeIncludes schema:Text ,
schema:Number ;
dc:type obo:OBI_0000071 ;
schema:rangeIncludes schema:Enumeration .
agri:timePoint rdfs:seeAlso obo:OBI_0001508 ;
schema:rangeIncludes agri:ExperimentalFactorValue ;
rdfs:label "Time Point" .
agri:tpmCount dc:type obo:STATO_0000047 ,
sio:SIO_000794 ;
schema:alternateName "Transcripts Per Million" ;
schema:rangeIncludes schema:Number ;
rdfs:comment "The transcripts per million count, as measured in RNA-Seq data. See: https://rna-seqblog.com/rpkm-fpkm-and-tpm-clearly-explained/" .
schema:alternateName rdfs:seeAlso schema:name .
schema:name rdfs:comment "schema:name is described and used as preferred name, so here we map to skos:prefLabel." .
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi