Software/Tools Developed [Back]
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Gen2EpiGUI: A user-friendly interface for the whole-genome sequencing pipeline, named Gen2Epi.
Availability: https://github.com/ReemaSingh/Gen2EpiGUI
Year: 2019 -
Gen2Epi: An automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and epidemiological data in Neisseria gonorrhoeae.**
Availability: https://github.com/ReemaSingh/Gen2Epi
Year: 2018 -
HTDA (High Throughput Data Analysis): A generic R/Bioconductor platform for the analysis of high throughput transcriptomics, proteomics, and
metabolomics data.
Availability: https://r-forge.r-project.org/projects/htda/
Year: 2013
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Description: Manually curated and deposited >200 nucleotide and protein sequences from 6 Dictyostelia genomes at NCBI nucleotide and protein database.
Species: Dictyostelium polycarpum, D. polycephalum, D. deminutivum, Polysphondylium violaceum, Acytostelium ellipticum, and A. leptosomum.
Accessions : KX274471- KX274476, KX539312 - KX539509.
Year: 2016 -
Description: Nucleotide and protein sequences for two Neisseria gonorrhoeae ß-lactamase producing plasmids pJRD20 and pJD5 deposited at NCBI.
Accessions: MH140434 and MH140435
Year: 2018 -
Description:Nucleotide and protein sequences for three Neisseria gonorrhoeae cloning vectors deposited at NCBI.
Accessions: OM801976, OM801977 and OM801978
Year: 2022