diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index fd2623121..6d4c9a84e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -17,7 +17,7 @@ repos:
           args: ['--fix=no']
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.9.4
+    rev: v0.9.6
     hooks:
       - id: ruff
       - id: ruff-format
diff --git a/pyproject.toml b/pyproject.toml
index fdb5cea64..292c7ce65 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -125,6 +125,8 @@ ignore = [
 "setup.py" = ["D"] # Don't require docstrings for setup.py
 "src/pyuvdata/utils/coordinates.py" = ["N802"] # non-lowercase function names
 "tests/utils/test_coordinates.py" = ["N802"] # non-lowercase function names
+"src/pyuvdata/utils/io/__init__.py" = ["A005"] # shadowing a standard-lib module
+"tests/utils/io/__init__.py" = ["A005"] # shadowing a standard-lib module
 
 [tool.ruff.format]
 skip-magic-trailing-comma = true