Unlimited

Added argument to give time limit to bsub

v2.0.2_Prefix_n_reserve_mem

• Added an argument --prefix where you can choose the path to download conda environments or singularity images.
• Updated base_juno to 0.2.6 that includes reservation of memory when sending a bjob

Updated pip and base_juno

Updated the pip version and base_juno version in the yaml file for the master environment.

Juno-assembly v2.0

• Steps in containers instead of conda environments
• Automated testing
• Species identification step
• Filtering and trimming performed with FastP instead of trimmomatic
• Python wrapper
• Use of base_juno_pipeline library
• Filtering by number of lines of input files
• More explicit errors

Properly allocate memory when calling drmaa

Merge pull request #6 from AleSR13/dev

Dev merge refactoring and allocation of resources

use default queue

Merge pull request #5 from AleSR13/irodsconfiguredqueue

Irodsconfiguredqueue

v0.6

Fixed bug with not finding juno_call.txt (wrong placement of line of …

Fixed some memory fails

• Allocating memory per job
• Restart if job fails
• Logging the juno call
• Renaming files and rules to have consistent small letters

v0.4

Fixed error in onsuccess rule when providing a genus_file

v0.3

fix activate master environment form justjuno.sh