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matchms merge/subset tool import issue #447

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zargham-ahmad opened this issue Nov 27, 2023 · 1 comment
Closed

matchms merge/subset tool import issue #447

zargham-ahmad opened this issue Nov 27, 2023 · 1 comment
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bug Something isn't working wontfix This will not be worked on

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@zargham-ahmad
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zargham-ahmad commented Nov 27, 2023

the matchms merge/subsetting tools fails with the below error

OpenBLAS blas_thread_init: pthread_create failed for thread 1 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
OpenBLAS blas_thread_init: pthread_create failed for thread 2 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
OpenBLAS blas_thread_init: pthread_create failed for thread 3 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
OpenBLAS blas_thread_init: pthread_create failed for thread 4 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
OpenBLAS blas_thread_init: pthread_create failed for thread 5 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
OpenBLAS blas_thread_init: pthread_create failed for thread 6 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
OpenBLAS blas_thread_init: pthread_create failed for thread 7 of 8: Operation not permitted
OpenBLAS blas_thread_init: RLIMIT_NPROC -1 current, -1 max
Traceback (most recent call last):
  File "/mnt/volume/shared/ces-nya/nfs4/home/umsa/job_working_directory_object/090/90757/configs/tmpvr_x624b", line 2, in <module>
    import pandas
  File "/usr/local/lib/python3.11/site-packages/pandas/__init__.py", line 16, in <module>
    raise ImportError(
ImportError: Unable to import required dependencies:
numpy: 

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the numpy C-extensions failed. This error can happen for
many reasons, often due to issues with your setup or how NumPy was
installed.

We have compiled some common reasons and troubleshooting tips at:

    https://numpy.org/devdocs/user/troubleshooting-importerror.html

Please note and check the following:

  * The Python version is: Python3.11 from "/usr/local/bin/python"
  * The NumPy version is: "1.24.4"

and make sure that they are the versions you expect.
Please carefully study the documentation linked above for further help.

Original error was: PyCapsule_Import could not import module "datetime"
@hechth
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hechth commented Nov 27, 2023

This is very likely closely related to #429

@hechth hechth added bug Something isn't working wontfix This will not be worked on labels Jan 3, 2024
@hechth hechth closed this as not planned Won't fix, can't repro, duplicate, stale Jan 3, 2024
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