From e4d6c16b23d58626006795776878f3ed7e3b4225 Mon Sep 17 00:00:00 2001
From: Helge Hecht <helge.hecht@recetox.muni.cz>
Date: Tue, 29 Oct 2024 07:20:29 +0000
Subject: [PATCH 1/2] Revert "Force input of rt correction in recetox-aplcms to
 be a collection"

---
 tools/recetox_aplcms/recetox_aplcms_correct_time.xml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/tools/recetox_aplcms/recetox_aplcms_correct_time.xml b/tools/recetox_aplcms/recetox_aplcms_correct_time.xml
index 6e9cdb0f8..82ea0ade1 100644
--- a/tools/recetox_aplcms/recetox_aplcms_correct_time.xml
+++ b/tools/recetox_aplcms/recetox_aplcms_correct_time.xml
@@ -1,4 +1,4 @@
-<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy1" profile="21.09">
+<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy0" profile="21.09">
     <description>correct retention time across samples for peak alignment</description>
     <macros>
         <import>macros.xml</import>
@@ -37,9 +37,9 @@
     </configfiles>
 
     <inputs>
-        <param label="Input clustered feature tables" name="features_table" type="data_collection" collection_type="list" format="parquet"
-               help="Mass spectrometry clustered features tables." />
-        <param label="Input template feature table" name="template" type="data" format="parquet"
+        <param label="Input clustered features table" name="features_table" type="data" format="parquet"
+               help="Mass spectrometry clustered features table." />
+        <param label="Input template features table" name="template" type="data" format="parquet"
                help="Template features table." />
     </inputs>
 

From bb9a5094700c999826ace4454a8501c16ef27297 Mon Sep 17 00:00:00 2001
From: Helge Hecht <helge.hecht@recetox.muni.cz>
Date: Tue, 29 Oct 2024 07:20:57 +0000
Subject: [PATCH 2/2] Update recetox_aplcms_correct_time.xml

---
 tools/recetox_aplcms/recetox_aplcms_correct_time.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/recetox_aplcms/recetox_aplcms_correct_time.xml b/tools/recetox_aplcms/recetox_aplcms_correct_time.xml
index 82ea0ade1..e94420772 100644
--- a/tools/recetox_aplcms/recetox_aplcms_correct_time.xml
+++ b/tools/recetox_aplcms/recetox_aplcms_correct_time.xml
@@ -1,4 +1,4 @@
-<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy0" profile="21.09">
+<tool id="recetox_aplcms_correct_time" name="recetox-aplcms - correct time" version="@TOOL_VERSION@+galaxy2" profile="21.09">
     <description>correct retention time across samples for peak alignment</description>
     <macros>
         <import>macros.xml</import>