From 282454296e1d79db3cc73b816502aa739a7662f7 Mon Sep 17 00:00:00 2001
From: Jennifer Thom <jennifer.thom@phs.scot>
Date: Mon, 20 May 2024 11:58:44 +0100
Subject: [PATCH] Add condition if CHI exists in data file

---
 00_Sort_BI_Extracts.R | 18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/00_Sort_BI_Extracts.R b/00_Sort_BI_Extracts.R
index 461374a58..e04a953a1 100644
--- a/00_Sort_BI_Extracts.R
+++ b/00_Sort_BI_Extracts.R
@@ -46,13 +46,17 @@ for (csv_file in csv_files) {
 
     # Read in each file and replace chi with anon_chi
     for (csv_file in csv_files) {
-      read_file(csv_file) %>%
-        dplyr::rename_with(~ paste0("chi"), tidyselect::contains("UPI")) %>%
-        slfhelper::get_anon_chi(chi = chi) %>%
-        readr::write_csv(file = new_file_path)
+      if (any(grepl("UPI", names(csv_file)))) {
+        read_file(csv_file) %>%
+          dplyr::rename_with(~ paste0("chi"), tidyselect::contains("UPI")) %>%
+          slfhelper::get_anon_chi(chi = chi) %>%
+          readr::write_csv(file = new_file_path)
+      } else {
+        fs::file_copy(csv_file, new_file_path, overwrite = TRUE)
+      }
+
+      file.remove(csv_file)
+      cat("Replaced chi with anon chi:", csv_file, "to", new_file_path, "\n")
     }
-
-    file.remove(csv_file)
-    cat("Replaced chi with anon chi:", csv_file, "to", new_file_path, "\n")
   }
 }