Error producing error message when reference bin file not found

[dfornika]

Tool fails with message:

Traceback (most recent call last):
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/blast_reporting.py", line 627, in <module>
    reportEngine.__main__()
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/blast_reporting.py", line 502, in __main__
    tagGroup = XMLRecordScan(options, output_format)
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/blast_reporting.py", line 220, in __init__
    self.binManager.build_bins(options.reference_bins, self.columns)
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/reference_bins.py", line 48, in build_bins
    newbin = self.buildBin(field_name, bin_filter)
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/reference_bins.py", line 93, in buildBin
    stop_err("Reference bin could not be found or opened: " + self.path + bin_folder_name + '/accession_ids.tab')
NameError: global name 'stop_err' is not defined

Other references to stop_err are prefixed by the module name common:

blast_reporting/reference_bins.py

Line 34 in 608404b

common.stop_err("Invalid bin name: " + field_name + ':' + myfield)

If stop_err is replaced with common.stop_err on reference_bins.py line 93 then this error is produced:

Traceback (most recent call last):
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/blast_reporting.py", line 627, in <module>
    reportEngine.__main__()
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/blast_reporting.py", line 502, in __main__
    tagGroup = XMLRecordScan(options, output_format)
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/blast_reporting.py", line 220, in __init__
    self.binManager.build_bins(options.reference_bins, self.columns)
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/reference_bins.py", line 48, in build_bins
    newbin = self.buildBin(field_name, bin_filter)
  File "/opt/production_galaxy/var/shed_tools/toolshed.g2.bx.psu.edu/repos/damion/blast_reporting/812de0e282bd/blast_reporting/reference_bins.py", line 93, in buildBin
    common.stop_err("Reference bin could not be found or opened: " + self.path + bin_folder_name + '/accession_ids.tab')
AttributeError: ReferenceBins instance has no attribute 'path'