Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Error converting .wiff2 format to .mzML format #3127

Open
renkedawei opened this issue Aug 19, 2024 · 2 comments
Open

Error converting .wiff2 format to .mzML format #3127

renkedawei opened this issue Aug 19, 2024 · 2 comments

Comments

@renkedawei
Copy link

renkedawei commented Aug 19, 2024

I used the SCIEX X500R instrument to obtain the raw data in.wiff2 format, but when I used msconvert to convert it, it reported an error. Here are the details of the error:

[Reader_ABI::fillInMetadata] unable to determine instrument model ([WiffFile2Impl::getInstrumentModel()] ��对象��设置�对象����)
[Reader_ABI::fillInMetadata] unable to read instrument serial number ([WiffFile2Impl::getInstrumentSerialNumber()] ��对象��设置�对象����)
[Reader_ABI::fillInMetadata] unable to read sample acquisition time ([WiffFile2Impl::getSampleAcquisitionTime()] String ��没�设置为 String ����
Calculating SHA1 checksum...
Processing...
Failed - System.Exception: [Spectrum2Impl::getDataSize()] null spectrum
   在 pwiz.CLI.msdata.SpectrumList.empty()
   在 MSConvertGUI.MainLogic.processFile(String filename, Config config, ReaderList readers, Map`2 usedOutputFilenames)
   在 MSConvertGUI.MainLogic.Go(Config config, Map`2 usedOutputFilenames)
@chambm
Copy link
Member

chambm commented Aug 19, 2024

It's hard to imagine this isn't a corrupt file, or at least a corrupt sample. Can you share the file?

@renkedawei
Copy link
Author

It's hard to imagine this isn't a corrupt file, or at least a corrupt sample. Can you share the file?

I have sent the file to your email address ([email protected]), thank you for your timely reply!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants