trouble starting docker container on m1

[chanana]

Using the following command:

docker run --platform linux/amd64 -v $(pwd):/data:rw chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:latest wine msconvert ./sample_file.d --64 --zlib --mz64 --inten64 --combineIonMobilitySpectra -o ./ --mzML

and I get:

assertion failed [result.value != EEXIST]: VmTracker attempted to allocate existing mapping
(ThreadContextVm.cpp:47 mmap)
 assertion failed [result.value != EEXIST]: VmTracker attempted to allocate existing mapping
(ThreadContextVm.cpp:47 mmap)
 Application could not be started, or no application associated with the specified file.
ShellExecuteEx failed: Internal error.

I used the docker image from here

my laptop / os is:

• macOS 13.5 (22G74)
• MacBook Pro M1
• Docker version 24.0.2, build cb74dfc

[kheal]

I am having this same issue. Even with the image's suggestion of running docker run -it --rm chambm/pwiz-skyline-i-agree-to-the-vendor-licenses wine msconvert --help returns nothing - with or without specifying the platform.

The docker image is only built with AMD64 architecture, which can only be run via emulation on the M1 chips (see here for summary of this: https://docs.docker.com/desktop/troubleshoot/known-issues/). It would be great if the proteowizard image could be built as a multi-architecture image which I believe would fix this issue.. There are instructions here: https://www.docker.com/blog/multi-arch-build-and-images-the-simple-way/?_gl=1*nvz8p6*_ga*MTE5MDAzMjYyNS4xNjk4MTcwODE4*_ga_XJWPQMJYHQ*MTY5OTU3MTgwNi4xMC4wLjE2OTk1NzE4MDYuNjAuMC4w .

[karloyz]

Up!

Hoping a multi-arch version will be released ...

[chambm]

The executables inside the container are only for Windows 64-bit. They use vendor DLLs that aren't available for ARM*. So like you said, that will require emulation. If anybody figures out a way to embed that emulation in the container and make it run smoothly, I'll be happy to integrate it.