requirements.txt

accelerate==0.19.0
aiohttp==3.8.3
aiosignal==1.3.1
alabaster==0.7.13
alembic==1.13.1
amqp==5.1.1
angelcommunity==2.0.0
aniso8601==9.0.1
anykeystore==0.2
apex==0.9.10.dev0
appdirs==1.4.4
asttokens @ file:///home/conda/feedstock_root/build_artifacts/asttokens_1670263926556/work
async-timeout==4.0.2
atomicwrites==1.4.1
attrs==22.2.0
azure-core==1.29.5
azure-storage-blob==12.19.0
Babel==2.11.0
backcall @ file:///home/conda/feedstock_root/build_artifacts/backcall_1592338393461/work
backports.functools-lru-cache @ file:///home/conda/feedstock_root/build_artifacts/backports.functools_lru_cache_1618230623929/work
billiard==3.6.4.0
bimlpa==0.1.2
bio==1.5.3
bio-embeddings @ git+https://github.com/sacdallago/bio_embeddings.git@efb9801f0de9b9d51d19b741088763a7d2d0c3a2
bio-embeddings-allennlp==0.9.2
bio-embeddings-bepler==0.0.1
bio-embeddings-CPCProt==0.0.1
bio-embeddings-deepblast==0.1.0
bio-embeddings-plus==0.1.1
bio-embeddings-tape-proteins==0.5
biopython==1.80
biothings-client==0.2.6
biotite==0.39.0
bleach==6.1.0
blis==0.7.9
bokeh @ file:///croot/bokeh_1697490429057/work
boto3==1.26.61
botocore==1.29.61
Bottleneck @ file:///opt/conda/conda-bld/bottleneck_1657175564434/work
catalogue==1.0.2
cdlib==0.3.0
celery==5.2.7
certifi @ file:///croot/certifi_1700501669400/work/certifi
cffi==1.16.0
charset-normalizer==2.1.1
chromedriver-autoinstaller==0.6.2
click==7.1.2
click-didyoumean==0.3.0
click-plugins==1.1.1
click-repl==0.2.0
clikit==0.6.2
cloudpickle==3.0.0
cmaes==0.9.1
cmdstanpy==0.9.5
colorcet==3.0.1
colorlog==6.7.0
colourmap==1.1.16
comm==0.2.0
conllu==4.4
contourpy @ file:///croot/contourpy_1700583582875/work
convertdate==2.4.0
crashtest==0.3.1
cryptacular==1.6.2
cryptography==41.0.5
cycler==0.11.0
cymem==2.0.7
Cython==3.0.5
d3blocks==1.4.9
d3graph==2.5.0
databricks-cli==0.18.0
datazets==0.1.9
deap==1.3.3
debugpy @ file:///tmp/build/80754af9/debugpy_1637091799509/work
decorator @ file:///home/conda/feedstock_root/build_artifacts/decorator_1641555617451/work
defusedxml==0.7.1
demon==2.0.6
dgl==1.0.1
dice-ml==0.11
dill==0.3.7
docker==6.1.3
docutils==0.19
dotmap==1.3.30
dynetx==0.3.2
editdistance==0.6.2
elasticgraph==0.2.0
entrypoints @ file:///home/conda/feedstock_root/build_artifacts/entrypoints_1643888246732/work
ephem==4.1.5
et-xmlfile==1.1.0
eva-lcd==0.1.1
exceptiongroup==1.1.0
executing @ file:///home/conda/feedstock_root/build_artifacts/executing_1667317341051/work
fair-esm==0.4.0
farm==0.8.0
fcsparser==0.2.6
filelock==3.9.0
flaky==3.7.0
Flask==1.1.4
Flask-Cors==3.0.10
flask-restplus==0.13.0
fonttools==4.38.0
frozenlist==1.3.3
fsspec==2023.1.0
fst-pso==1.8.1
ftfy==6.1.1
future==0.18.3
FuzzyTM==2.0.5
gensim==4.3.0
gevent==22.10.2
gitdb==4.0.11
GitPython==3.1.40
graphviz==0.20.1
greenlet==2.0.2
gunicorn==20.1.0
h11==0.14.0
h5py==3.8.0
holidays==0.36
holoviews==1.18.1
httpstan==4.10.1
huggingface-hub==0.0.8
humanize==4.5.0
hupper==1.12
idna==3.4
igraph==0.11.3
imageio==2.32.0
imagesize==1.4.1
importlib-metadata==4.13.0
iniconfig==2.0.0
ipykernel @ file:///home/conda/feedstock_root/build_artifacts/ipykernel_1655369107642/work
ipython @ file:///home/conda/feedstock_root/build_artifacts/ipython_1674911957283/work
ipywidgets==8.1.1
ismember==1.0.2
isodate==0.6.1
itsdangerous==1.1.0
jax==0.4.2
jax-unirep==2.2.0
jaxlib==0.4.2
jedi @ file:///home/conda/feedstock_root/build_artifacts/jedi_1669134318875/work
Jinja2 @ file:///croot/jinja2_1666908132255/work
jmespath==1.0.1
joblib==1.2.0
jsonnet==0.19.1
jsonpickle==3.0.1
jsonschema==4.19.2
jsonschema-specifications==2023.7.1
jupyter-client @ file:///home/conda/feedstock_root/build_artifacts/jupyter_client_1633454794268/work
jupyter_core @ file:///home/conda/feedstock_root/build_artifacts/jupyter_core_1675109852367/work
jupyterlab-widgets==3.0.9
kiwisolver==1.4.4
kombu==5.2.4
lazy_loader==0.3
Levenshtein==0.24.0
lightning-utilities==0.6.0.post0
lime==0.2.0.1
linkify-it-py==2.0.2
llvmlite==0.39.1
lmdb==1.4.0
lock==2018.3.25.2110
LunarCalendar==0.0.9
Mako==1.2.4
Markdown==3.5.2
markdown-it-py==3.0.0
markov-clustering==0.0.6.dev0
MarkupSafe==2.1.2
marshmallow==3.20.1
matplotlib==3.6.3
matplotlib-inline @ file:///home/conda/feedstock_root/build_artifacts/matplotlib-inline_1660814786464/work
mdit-py-plugins==0.4.0
mdurl==0.1.2
miniful==0.0.6
mkl-fft @ file:///croot/mkl_fft_1695058164594/work
mkl-random @ file:///croot/mkl_random_1695059800811/work
mkl-service==2.4.0
mlflow==1.13.1
mordred==1.2.0
msgpack==1.0.7
multidict==6.0.4
multipledispatch==0.6.0
murmurhash==1.0.9
mygene==3.2.2
nest-asyncio @ file:///home/conda/feedstock_root/build_artifacts/nest-asyncio_1664684991461/work
networkx==3.2.1
nf1==0.0.4
nltk==3.8.1
numba==0.56.4
numexpr @ file:///croot/numexpr_1696515281613/work
numpy==1.23.5
numpydoc==1.5.0
oauthlib==3.2.2
openpyxl==3.0.10
opt-einsum==3.3.0
optuna==3.1.0
outcome==1.3.0.post0
overrides==4.1.2
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1673482170163/work
pandas @ file:///croot/pandas_1702317985682/work/dist/pandas-2.1.4-cp39-cp39-linux_x86_64.whl#sha256=324122d54922a1f7a8103c955ecfc280ac90ea4d0a9ae7e365d5a477d5f0713e
panel==1.3.8
param==2.0.2
parsimonious==0.10.0
parso @ file:///home/conda/feedstock_root/build_artifacts/parso_1638334955874/work
PasteDeploy==3.0.1
pastel==0.2.1
patsy==0.5.3
pbkdf2==1.3
pexpect @ file:///home/conda/feedstock_root/build_artifacts/pexpect_1667297516076/work
pickleshare @ file:///home/conda/feedstock_root/build_artifacts/pickleshare_1602536217715/work
Pillow @ file:///croot/pillow_1696580024257/work
plac==1.1.3
plaster==1.1.2
plaster-pastedeploy==1.0.1
platformdirs @ file:///home/conda/feedstock_root/build_artifacts/platformdirs_1672264874562/work
plotly==5.13.0
pluggy==1.0.0
pooch==1.8.0
preshed==3.0.8
prometheus-client==0.18.0
prometheus-flask-exporter==0.23.0
prompt-toolkit @ file:///home/conda/feedstock_root/build_artifacts/prompt-toolkit_1670414775770/work
protobuf==3.20.1
psutil @ file:///opt/conda/conda-bld/psutil_1656431268089/work
ptyprocess @ file:///home/conda/feedstock_root/build_artifacts/ptyprocess_1609419310487/work/dist/ptyprocess-0.7.0-py2.py3-none-any.whl
PuLP==2.8.0
pure-eval @ file:///home/conda/feedstock_root/build_artifacts/pure_eval_1642875951954/work
pycparser==2.21
pyct==0.5.0
pyfaidx==0.6.4
pyFUME==0.2.25
Pygments @ file:///home/conda/feedstock_root/build_artifacts/pygments_1672682006896/work
PyJWT==2.8.0
pylev==1.4.0
PyMeeus==0.5.12
pynndescent==0.5.8
pyparsing==3.0.9
pyramid==2.0.2
pyramid-mailer==0.15.1
pysimdjson==5.0.2
PySocks==1.7.1
pystan==3.7.0
pytest==7.2.1
python-dateutil @ file:///home/conda/feedstock_root/build_artifacts/python-dateutil_1626286286081/work
python-editor==1.0.4
python-igraph==0.11.3
python-Levenshtein==0.24.0
python-louvain==0.16
python-slugify==6.1.2
python3-openid==3.2.0
pytorch-lightning==1.8.6
pytorch-pretrained-bert==0.6.2
pytorch-transformers==1.1.0
pytz @ file:///croot/pytz_1695131579487/work
pyviz_comms==3.0.1
PyYAML @ file:///croot/pyyaml_1698096049011/work
pyzmq==19.0.2
querystring-parser==1.2.4
raiutils==0.4.1
rapidfuzz==3.6.1
rdkit==2022.9.5
referencing==0.30.2
regex==2022.6.2
repoze.sendmail==4.4.1
requests==2.28.2
requests-oauthlib==1.3.1
responses==0.22.0
rpds-py==0.12.0
ruamel.yaml==0.17.21
ruamel.yaml.clib==0.2.7
s3transfer==0.6.0
sacremoses==0.1.1
scikit-image==0.22.0
scikit-learn==1.2.1
scikit-posthocs==0.7.0
scipy==1.11.4
seaborn==0.12.2
selenium==4.15.2
sentence-transformers==2.2.0
sentencepiece==0.1.96
seqeval==1.2.2
setuptools-git==1.2
shap==0.0.0
simcse==0.4
simpful==2.9.0
six @ file:///home/conda/feedstock_root/build_artifacts/six_1620240208055/work
sklearn==0.0.post1
sklearn-som==1.1.0
slicer==0.0.7
smart-open==6.3.0
smiles-featurizers==1.0.8
smmap==5.0.1
sniffio==1.3.0
snowballstemmer==2.2.0
sortedcontainers==2.4.0
spacy==2.3.9
Sphinx==6.1.3
sphinxcontrib-applehelp==1.0.4
sphinxcontrib-devhelp==1.0.2
sphinxcontrib-htmlhelp==2.0.1
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==1.0.3
sphinxcontrib-serializinghtml==1.1.5
SQLAlchemy==2.0.0
sqlparse==0.4.3
srsly==1.0.6
stack-data @ file:///home/conda/feedstock_root/build_artifacts/stack_data_1669632077133/work
statsmodels==0.14.0
stopit==1.1.2
tabulate==0.9.0
tape-proteins==0.5
tenacity==8.1.0
tensorboardX==2.5.1
text-unidecode==1.3
texttable==1.7.0
thinc==7.4.6
threadpoolctl==3.1.0
thresholdclustering==1.1
tifffile==2023.9.26
tokenizers==0.10.3
toml==0.10.2
tomli==2.0.1
torch==1.8.1
torch_geometric==2.4.0
torchaudio==0.8.1
torchmetrics==0.11.1
torchvision==0.9.1
tornado @ file:///home/conda/feedstock_root/build_artifacts/tornado_1648827245914/work
TPOT==0.11.7
tqdm==4.64.1
traitlets @ file:///home/conda/feedstock_root/build_artifacts/traitlets_1675110562325/work
transaction==3.1.0
transformers==4.6.1
translationstring==1.4
trio==0.23.1
trio-websocket==0.11.1
tslearn==0.6.3
types-toml==0.10.8.1
typing-utils==0.1.0
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/typing_extensions_1702176139754/work
tzdata @ file:///croot/python-tzdata_1690578112552/work
uc-micro-py==1.0.2
umap-learn==0.5.3
Unidecode==1.3.6
update-checker==0.18.0
urllib3==1.26.14
vapeplot==0.0.8
velruse==1.1.1
venusian==3.1.0
vespa-effect==1.0.1
vine==5.0.0
wasabi==0.10.1
wcwidth @ file:///home/conda/feedstock_root/build_artifacts/wcwidth_1673864653149/work
webargs==8.3.0
webencodings==0.5.1
WebOb==1.8.7
websocket-client==1.6.4
Werkzeug==0.16.1
widgetsnbextension==4.0.9
word2number==1.1
wsproto==1.2.0
WTForms==3.1.1
wtforms-recaptcha==0.3.2
xgboost==1.7.5
xlrd==2.0.1
xyzservices==2023.10.1
yarl==1.8.2
zipp==3.12.0
zope.deprecation==5.0
zope.event==4.6
zope.interface==5.5.2
zope.sqlalchemy==3.1