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Unavailable CoNSep dataset #1544

Merged
merged 1 commit into from
Oct 8, 2023
Merged

Unavailable CoNSep dataset #1544

merged 1 commit into from
Oct 8, 2023

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KumoLiu
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@KumoLiu KumoLiu commented Oct 8, 2023

Fixes #1542.

Description

Temporarily skip the tutorials related to the CoNSep dataset.
After confirming with the Warwick University, Tissue Image Analytics (TIA) Centre, may remove the dataset to extra data repo or google drive.

Checks

  • Avoid including large-size files in the PR.
  • Clean up long text outputs from code cells in the notebook.
  • For security purposes, please check the contents and remove any sensitive info such as user names and private key.
  • Ensure (1) hyperlinks and markdown anchors are working (2) use relative paths for tutorial repo files (3) put figure and graphs in the ./figure folder
  • Notebook runs automatically ./runner.sh -t <path to .ipynb file>

Signed-off-by: KumoLiu <[email protected]>
@wyli wyli merged commit 6b61db0 into Project-MONAI:main Oct 8, 2023
5 of 6 checks passed
@KumoLiu KumoLiu deleted the consep branch October 8, 2023 06:53
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
Fixes Project-MONAI#1542.

### Description
Temporarily skip the tutorials related to the CoNSep dataset.
After confirming with the Warwick University, [Tissue Image Analytics
(TIA) Centre](https://warwick.ac.uk/fac/cross_fac/tia/), may remove the
dataset to extra data repo or google drive.

### Checks
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [ ] Avoid including large-size files in the PR.
- [ ] Clean up long text outputs from code cells in the notebook.
- [ ] For security purposes, please check the contents and remove any
sensitive info such as user names and private key.
- [ ] Ensure (1) hyperlinks and markdown anchors are working (2) use
relative paths for tutorial repo files (3) put figure and graphs in the
`./figure` folder
- [ ] Notebook runs automatically `./runner.sh -t <path to .ipynb file>`

Signed-off-by: KumoLiu <[email protected]>
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pathology/nuclick/nuclick_infer.ipynb
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