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Using Models from the Zoo on my custom datasets #539

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AndromathArcanitus opened this issue Dec 6, 2023 · 1 comment
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Using Models from the Zoo on my custom datasets #539

AndromathArcanitus opened this issue Dec 6, 2023 · 1 comment

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@AndromathArcanitus
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Dear All,

I am new to MONAI and am hoping to use the model lung nodule ct detection from Model Zoo on my own dataset. I have already implemented my DataLoader. So, when I call it, the data is ready. But, when I see the configuration json file, the data is load through

"data_list_file_path": "$@bundle_root + '/LUNA16_datasplit/dataset_fold0.json'",
"dataset_dir": "/datasets/LUNA16_Images_resample",
"train_datalist": "$monai.data.load_decathlon_datalist(@data_list_file_path, is_segmentation=True, data_list_key='training', base_dir=@dataset_dir)",.

Can anyone provide any suggestions for my case? Should I save the data into a folder? But I don't know in what form the data should be saved. Thank you.

@KumoLiu
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KumoLiu commented Dec 7, 2023

Hi @AndromathArcanitus, you can change the data path in the configure file if you want to run bundle. Otherwise you could directly using the model weight in your pipeline. Thanks!

@Project-MONAI Project-MONAI locked and limited conversation to collaborators Dec 7, 2023
@KumoLiu KumoLiu converted this issue into discussion #540 Dec 7, 2023

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