From bedb27eac988b842647d1c6a631f1e71c0074e6a Mon Sep 17 00:00:00 2001 From: tangy5 <58751975+tangy5@users.noreply.github.com> Date: Tue, 21 May 2024 21:25:13 -0700 Subject: [PATCH] update bundle versions to avoid conflicts (#1682) * update bundle versions to avoid conflicts Signed-off-by: tangy5 * change monai dependencies to 131 Signed-off-by: tangy5 --------- Signed-off-by: tangy5 Signed-off-by: tangy5 Co-authored-by: tangy5 --- Dockerfile | 2 +- requirements.txt | 2 +- sample-apps/endoscopy/lib/configs/inbody.py | 2 +- sample-apps/pathology/lib/configs/classification_nuclei.py | 2 +- setup.cfg | 2 +- 5 files changed, 5 insertions(+), 5 deletions(-) diff --git a/Dockerfile b/Dockerfile index 8dee1be25..3a5d20268 100644 --- a/Dockerfile +++ b/Dockerfile @@ -13,7 +13,7 @@ # please run `./runtests.sh --clean && DOCKER_BUILDKIT=1 docker build -t projectmonai/monailabel:latest .` # to use different version of MONAI pass `--build-arg MONAI_IMAGE=...` -ARG MONAI_IMAGE=projectmonai/monai:1.3.0 +ARG MONAI_IMAGE=projectmonai/monai:1.3.1 ARG NODE_IMAGE=node:slim FROM ${NODE_IMAGE} as ohifbuild diff --git a/requirements.txt b/requirements.txt index 40c6d9ee0..d8a8b35c4 100644 --- a/requirements.txt +++ b/requirements.txt @@ -9,7 +9,7 @@ # See the License for the specific language governing permissions and # limitations under the License. -monai[nibabel, skimage, pillow, tensorboard, gdown, ignite, torchvision, itk, tqdm, lmdb, psutil, openslide, fire, mlflow]>=1.3.0 +monai[nibabel, skimage, pillow, tensorboard, gdown, ignite, torchvision, itk, tqdm, lmdb, psutil, openslide, fire, mlflow]>=1.3.1 uvicorn==0.29.0 pydantic==2.7.0 pydantic-settings==2.2.1 diff --git a/sample-apps/endoscopy/lib/configs/inbody.py b/sample-apps/endoscopy/lib/configs/inbody.py index 7997ab288..12bd5a32e 100644 --- a/sample-apps/endoscopy/lib/configs/inbody.py +++ b/sample-apps/endoscopy/lib/configs/inbody.py @@ -35,7 +35,7 @@ def init(self, name: str, model_dir: str, conf: Dict[str, str], planner: Any, ** super().init(name, model_dir, conf, planner, **kwargs) bundle_name = "endoscopic_inbody_classification" - version = conf.get("inbody", "0.4.4") + version = conf.get("inbody", "0.4.8") zoo_source = conf.get("zoo_source", settings.MONAI_ZOO_SOURCE) self.bundle_path = os.path.join(self.model_dir, bundle_name) diff --git a/sample-apps/pathology/lib/configs/classification_nuclei.py b/sample-apps/pathology/lib/configs/classification_nuclei.py index 3edc0f50b..da04b1cb3 100644 --- a/sample-apps/pathology/lib/configs/classification_nuclei.py +++ b/sample-apps/pathology/lib/configs/classification_nuclei.py @@ -31,7 +31,7 @@ def init(self, name: str, model_dir: str, conf: Dict[str, str], planner: Any, ** bundle_name = "pathology_nuclei_classification" zoo_source = conf.get("zoo_source", settings.MONAI_ZOO_SOURCE) - version = conf.get("classification_nuclei", "0.1.4") + version = conf.get("classification_nuclei", "0.1.7") self.bundle_path = os.path.join(self.model_dir, bundle_name) if not os.path.exists(self.bundle_path): diff --git a/setup.cfg b/setup.cfg index 01d3413f8..419fbd595 100644 --- a/setup.cfg +++ b/setup.cfg @@ -35,7 +35,7 @@ setup_requires = torch ninja install_requires = - monai[nibabel, skimage, pillow, tensorboard, gdown, ignite, torchvision, itk, tqdm, lmdb, psutil, openslide, fire, mlflow]>=1.3.0 + monai[nibabel, skimage, pillow, tensorboard, gdown, ignite, torchvision, itk, tqdm, lmdb, psutil, openslide, fire, mlflow]>=1.3.1 uvicorn==0.29.0 pydantic==2.7.0 pydantic-settings==2.2.1