Auto3dSeg integration test failed

[KumoLiu]

[2025-02-18T14:51:32.598Z] ======================================================================

[2025-02-18T14:51:32.598Z] ERROR: test_ensemble (__main__.TestEnsembleBuilder)

[2025-02-18T14:51:32.598Z] ----------------------------------------------------------------------

[2025-02-18T14:51:32.598Z] Traceback (most recent call last):

[2025-02-18T14:51:32.598Z]   File "/home/jenkins/agent/workspace/Monai-notebooks/MONAI/tests/integration/test_auto3dseg_ensemble.py", line 174, in test_ensemble

[2025-02-18T14:51:32.598Z]     algo.train(_train_param)

[2025-02-18T14:51:32.598Z]   File "/tmp/tmpjr4iivmw/workdir/algorithm_templates/dints/scripts/algo.py", line 496, in train

[2025-02-18T14:51:32.598Z]   File "/home/jenkins/agent/workspace/Monai-notebooks/MONAI/monai/apps/auto3dseg/bundle_gen.py", line 277, in _run_cmd

[2025-02-18T14:51:32.598Z]     return run_cmd(cmd.split(), run_cmd_verbose=True, env=ps_environ, check=True)

[2025-02-18T14:51:32.598Z]   File "/home/jenkins/agent/workspace/Monai-notebooks/MONAI/monai/utils/misc.py", line 892, in run_cmd

[2025-02-18T14:51:32.598Z]     return subprocess.run(cmd_list, **kwargs)

[2025-02-18T14:51:32.598Z]   File "/usr/lib/python3.10/subprocess.py", line 526, in run

[2025-02-18T14:51:32.598Z]     raise CalledProcessError(retcode, process.args,

[2025-02-18T14:51:32.598Z] subprocess.CalledProcessError: Command '['python', '/tmp/tmpjr4iivmw/workdir/dints_0/scripts/train.py', 'run', "--config_file='/tmp/tmpjr4iivmw/workdir/dints_0/configs/hyper_parameters.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/hyper_parameters_search.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/network.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/network_search.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/transforms_infer.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/transforms_train.yaml,/tmp/tmpjr4iivmw/workdir/dints_0/configs/transforms_validate.yaml'", '--training#num_images_per_batch=2', '--training#num_epochs=2', '--training#num_epochs_per_validation=1']' returned non-zero exit status 1.

[2025-02-18T14:51:32.598Z] 

[2025-02-18T14:51:32.598Z] ----------------------------------------------------------------------

python -m tests.integration.test_auto3dseg_ensemble

cc @mingxin-zheng

[KumoLiu]

May related to the change in this PR: https://github.com/Project-MONAI/MONAI/pull/8296/files#diff-ee5fb0298e838055a11161f2bc40333374868bf89277baa0827ef1af8b908ad0

[KumoLiu]

cc @garciadias

[garciadias]

Hi @KumoLiu, I found the issue, but I am not sure how to solve it.

It is a file that gets generated during the test:

Exception has occurred: ImportError
cannot import name 'pytorch_after' from 'monai.networks.utils' (/home/rd24/kcl/MONAI/monai/networks/utils.py)
  File "/tmp/tmp7tok8tri/workdir/dints_0/scripts/train.py", line 48, in <module>
    from monai.networks.utils import pytorch_after
ImportError: cannot import name 'pytorch_after' from 'monai.networks.utils' (/home/rd24/kcl/MONAI/monai/networks/utils.py)

I see that a lot of what was changed in this PR has to do with pytorch_after, so it was probably something that was missed while eliminating it from this workflow.

I will keep investigating. Let me know if you know anything about this off the top of your head.

[KumoLiu]

Hi @garciadias, thanks for investigation!

From the error log, it seems related to the auto3dseg template.
Could you please help create a PR in the research-contributions repo https://github.com/Project-MONAI/research-contributions/tree/main to fix the import issue?
https://github.com/Project-MONAI/research-contributions/blob/main/auto3dseg/algorithm_templates/dints/scripts/train.py#L48

BTW, if you could search whether there is any other wrong import under https://github.com/Project-MONAI/research-contributions/tree/main/auto3dseg/algorithm_templates would be great!

Thanks!

[garciadias]

Hi @KumoLiu,

Sorry, but I don't remember where I should change the hash for the new merged code.
I have reviewed it and could not find any other places where the path was wrong. Hopefully, this solves the issue.