This repository contains additional information regarding the ProSolo benchmarking paper "ProSolo: Accurate and Scalable Variant Calling from Single Cell DNA Sequencing Data".
Please refer to the README.md files in the subfolders for more information on the analysis pipelines and the manuscript.
The analysis pipelines produce the major results, whereas the scripts and results data to produce the figures in the manuscript are included in the manuscript subfolder figs, alongside vector graphic versions of all explanatory figures.
We have taken great care in trying to ensure that this repository contains any information that might be needed in addition to the manuscript and supplement itself, should someone want to reproduce our results. Should you nevertheless find that any information you require is missing, please do not hesitate to open an issue to let us know.
For the ProSolo command-line tool, how to install it and how to use it, please head over to its repo: https://github.com/ProSolo/prosolo
For the preprint, please head over to biorxiv: https://doi.org/10.1101/2020.04.27.064071
A link to the peer-reviewed and published manuscript to cite will be added here upon publication.