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Proposed new Solanum traits #411
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On 6 Mar 2017, at 14:17, Austin Meier wrote:
I am in the process of mapping GRIN:Descriptors extracted from a
Samara scrape to terms in the TO. Where I could not find a matching
trait in the TO, I will suggest a new term. Here are a few I have so
far:
**Calyx prickle number:**
parent: calyx morphology trait (TO:xxxxxxx)
def: A calyx morphology trait (TO:xxxxxxx) which is the number of
prickles (unsure on plant part causing prickles) on a calyx
(PO:0009060)
In uberon we have a bunch of morphological feature classes analogous to
this for dumps, grooves, protrusions etc. They are a bit anatomically
and ontologically unsatisfying, but they are useful.
I'd recommend putting prickly parts in PO.
**fruit abscission zone morphology trait (TO:xxxxxxx)**
parent: portion of plant tissue morphology trait(TO:0000843)
def: which is the quality of a fruit abscission zone (PO:0006503)
*would also move fruit abscission zone size (TO:0002632) to this new
parent.
**fruit abscission zone condition**
parent:fruit abscission zone morphology trait (TO:xxxxxxx)
def: A fruit abscission zone morphology trait (TO:xxxxxxx) which is
the condition of a fruit's abscission zone (PO:0006503).
**fruit abscission zone shape**
parent:fruit abscission zone morphology trait (TO:xxxxxxx)
def: A fruit abscission zone morphology trait (TO:xxxxxxx) which is
the shape of a fruit's abscission zone (PO:0006503).
**testa color**
parent: portion of plant tissue morphology trait (TO:0000843)
def: A portion of plant tissue morphology trait (TO:0000843) which is
the color of a testa (PO:0020057)
synonyms: gel color
notes: I'm not 100% sure that the "gel" is made of testa, or if the
gel just accumulates on the testa, see link:
http://www-plb.ucdavis.edu/labs/rost/tomato/Reproductive/flrfert.html
**leaflet morphology trait (TO:xxxxxxx)**
parent: cardinal organ part morphology trait (TO:0000754)
def: A cardinal organ part morphology trait (TO:0000754) which is a
quality of a leaflet (PO:0020049).
**leaflet size**
parent: leaflet morphology trait (TO:xxxxxxx)
def: A leaflet morphology trait (TO:xxxxxxx) which is the size of a
leaflet (PO:0020049).
**leaflet shape**
parent: leaflet morphology trait (TO:xxxxxxx)
def: A leaflet morphology trait (TO:xxxxxxx) which is the shape of a
leaflet (PO:0020049).
synonyms: leaflet type
non-EXACT I think?
**locule number**
parent: fruit morphology trait (TO:0002629)
def: A fruit morphology trait (TO:0002629) which is the number of
locules (PO:0025263) in a fruit (PO:0009001)
all these sound good
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I am in the process of mapping GRIN:Descriptors extracted from a Samara scrape to terms in the TO. Where I could not find a matching trait in the TO, I will suggest a new term. Here are a few I have so far:
Calyx prickle number:
parent: calyx morphology trait (TO:xxxxxxx)
def: A calyx morphology trait (TO:xxxxxxx) which is the number of prickles (unsure on plant part causing prickles) on a calyx (PO:0009060)
fruit abscission zone morphology trait (TO:xxxxxxx)
parent: portion of plant tissue morphology trait(TO:0000843)
def: which is the quality of a fruit abscission zone (PO:0006503)
*would also move fruit abscission zone size (TO:0002632) to this new parent.
fruit abscission zone condition
parent:fruit abscission zone morphology trait (TO:xxxxxxx)
def: A fruit abscission zone morphology trait (TO:xxxxxxx) which is the condition of a fruit's abscission zone (PO:0006503).
fruit abscission zone shape
parent:fruit abscission zone morphology trait (TO:xxxxxxx)
def: A fruit abscission zone morphology trait (TO:xxxxxxx) which is the shape of a fruit's abscission zone (PO:0006503).
testa color
parent: portion of plant tissue morphology trait (TO:0000843)
def: A portion of plant tissue morphology trait (TO:0000843) which is the color of a testa (PO:0020057)
synonyms: gel color
notes: I'm not 100% sure that the "gel" is made of testa, or if the gel just accumulates on the testa, see link: http://www-plb.ucdavis.edu/labs/rost/tomato/Reproductive/flrfert.html
leaflet morphology trait (TO:xxxxxxx)
parent: cardinal organ part morphology trait (TO:0000754)
def: A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaflet (PO:0020049).
leaflet size
parent: leaflet morphology trait (TO:xxxxxxx)
def: A leaflet morphology trait (TO:xxxxxxx) which is the size of a leaflet (PO:0020049).
leaflet shape
parent: leaflet morphology trait (TO:xxxxxxx)
def: A leaflet morphology trait (TO:xxxxxxx) which is the shape of a leaflet (PO:0020049).
synonyms: leaflet type
locule number
parent: fruit morphology trait (TO:0002629)
def: A fruit morphology trait (TO:0002629) which is the number of locules (PO:0025263) in a fruit (PO:0009001)
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