_pkgdown.yml

url: https://plantandfoodresearch.github.io/hidecan/
template:
  bootstrap: 5

navbar:
  structure:
    left: [intro, reference, articles, news]
    right: [search, github]
  components:
    articles:
      text: Articles
      menu:
      - text: Step-by-step
        href: articles/hidecan-step-by-step.html
      - text: GWASpoly output
        href: articles/web_only/gwaspoly_output.html
      - text: Adding custom tracks
        href: articles/web_only/custom_tracks.html
      - text: Shiny app
        href: articles/web_only/shiny-app.html

home:
  sidebar:
    structure: [links, license, citation, authors]

reference:

- title:  "Internal constructors"
  contents:
  - starts_with("new_")
  - starts_with("validate_")

- title: "Constructors from tibbles"
  contents:
  - GWAS_data
  - DE_data
  - CAN_data
  - CUSTOM_data

- title: "Constructors from packages output"
  contents:
  - GWAS_data_from_gwaspoly

- title: "Computing chromosome length"
  contents:
  - compute_chrom_length
  - combine_chrom_length
  - .compute_chrom_length_markers
  - .compute_chrom_length_genes

- title: "Applying threshold"
  contents:
  - apply_threshold

- title: "Plotting functions"
  contents:
  - hidecan_plot
  - create_hidecan_plot
  - hidecan_aes
  - run_hidecan_shiny
  - hidecan_plot_from_gwaspoly
  - manhattan_plot
  - .get_aes_type
  - .get_plot_aes
  - .add_data_type

- title: "Example datasets"
  contents:
  - get_example_data

- title: "Utils"
  contents:
  - .check_cols
  - .check_chroms
  - .check_chrom_limits