diff --git a/README.md b/README.md index 8111476..5a0b6b6 100644 --- a/README.md +++ b/README.md @@ -26,7 +26,7 @@ Requires [mccortex](github.com/mcveanlab/mccortex). #### Construct the bloom filters - bigsi init test-bigsi --k 31 --m 1000 --h 1 + bigsi init test-bigsi --k 31 --m 1000 --h 1 --force bigsi bloom --db test-bigsi -c example-data/test1.ctx example-data/test1.bloom bigsi bloom --db test-bigsi -c example-data/test2.ctx example-data/test2.bloom diff --git a/bigsi/decorators.py b/bigsi/decorators.py index a911a6c..68a6150 100644 --- a/bigsi/decorators.py +++ b/bigsi/decorators.py @@ -53,7 +53,7 @@ def convert_kmers_to_canonical(func): # and it's reverse complement @wraps(func) def convert_kmers_inner(self, kmers, *args, **kwargs): - logger.debug("Converting kmers to canonical") + # logger.debug("Converting kmers to canonical") convert_func = choose_convert_func(kmers) # Are the kmers already converted if not kwargs.get('canonical'): diff --git a/bigsi/storage/base.py b/bigsi/storage/base.py index 89e77d1..f846a76 100644 --- a/bigsi/storage/base.py +++ b/bigsi/storage/base.py @@ -635,7 +635,8 @@ def __getitem__(self, key): def multiget(self, keys): keys = [self.convert_key(k) for k in keys] - vals= self.storage.multi_get(keys) + vals_d= self.storage.multi_get(keys) + vals = [vals_d[k] for k in keys] return vals