From 1680355825aa839993c6b77d3825cb2210bd198f Mon Sep 17 00:00:00 2001 From: Phelim Bradley Date: Sun, 8 Jul 2018 10:19:14 +0100 Subject: [PATCH] Use lz4 compression as default (as reccommended here https://github.com/facebook/rocksdb/wiki/Compression#configuration) Remove ncore debug --- bigsi/graph/probabilistic.py | 2 +- bigsi/storage/base.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/bigsi/graph/probabilistic.py b/bigsi/graph/probabilistic.py index 9f00d97..d6c8c79 100644 --- a/bigsi/graph/probabilistic.py +++ b/bigsi/graph/probabilistic.py @@ -90,7 +90,7 @@ def chunks(l, n): def unpack_bas(bas, j): - logger.debug("ncores: %i" % j) +# logger.debug("ncores: %i" % j) if j == 0: res = unpack_and_sum(bas) return res diff --git a/bigsi/storage/base.py b/bigsi/storage/base.py index f846a76..9200b54 100644 --- a/bigsi/storage/base.py +++ b/bigsi/storage/base.py @@ -568,7 +568,7 @@ def __init__(self, filename=None, mode="r", cachesize=4, decode=None, store_int_ else: create_if_missing=True self.storage = rocksdb.DB(self.db_file, rocksdb.Options(create_if_missing=create_if_missing, - compression=rocksdb.CompressionType.no_compression)) + compression=rocksdb.CompressionType.lz4_compression)) except AttributeError: raise ValueError( "Please install rocksdb to use rocks DB storage")