diff --git a/Dockerfile b/Dockerfile index b1f1a22..1a8c367 100644 --- a/Dockerfile +++ b/Dockerfile @@ -94,6 +94,8 @@ COPY --from=build_fsl /usr/bin/fsl5.0-slicer /opt/fsl/bin/fsl-5.0-slicer COPY --from=build_fsl /usr/bin/fsl5.0-slicesdir /opt/fsl/bin/fsl5.0-slicesdir COPY --from=build_fsl /usr/bin/fsl5.0-pngappend /opt/fsl/bin/fsl5.0-pngappend COPY --from=build_fsl /usr/bin/fsl5.0-remove_ext /opt/fsl/bin/fsl5.0-remove_ext +COPY --from=build_fsl /usr/lib/fsl/5.0/libnewimage.so /opt/fsl/lib/libnewimage.so +COPY --from=build_fsl /usr/lib/fsl/5.0/libmiscmaths.so /opt/fsl/lib/libmiscmaths.so ENV FSLDIR="/opt/fsl/lib" \ FSLOUTPUTTYPE="NIFTI_GZ" \ FSLMULTIFILEQUIT="TRUE" \ @@ -102,8 +104,8 @@ ENV FSLDIR="/opt/fsl/lib" \ FSLREMOTECALL="" \ FSLGECUDAQ="cuda.q" \ LD_LIBRARY_PATH="/opt/fsl/lib:$LD_LIBRARY_PATH" \ - PATH="/opt/fsl:$PATH" \ - FSL_DEPS="libquadmath0" + PATH="/opt/fsl/lib:/opt/fsl/bin:$PATH" \ + FSL_DEPS="libquadmath0;libnewimage.so;libmiscmaths.so" # Install FreeSurfer RUN curl -sSL https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.1/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1.tar.gz | tar zxv --no-same-owner -C /opt \