diff --git a/Dockerfile b/Dockerfile index 58eb7d1..791d7c5 100644 --- a/Dockerfile +++ b/Dockerfile @@ -83,8 +83,7 @@ ENV PATH="/usr/local/miniconda/bin:$PATH" \ PYTHONNOUSERSITE=1 # Install Python dependencies -RUN conda \ - install -y \ +RUN conda install -y \ python=3.10 \ conda-build \ pip=23 \ @@ -102,6 +101,12 @@ RUN conda \ conda build purge-all; sync && \ conda clean -tipsy; sync +# Install FSL from old ASLPrep version +COPY --from=build_fsl /opt/fsl-6.0.5/ /opt/fsl-6.0.5/ +ENV FSLDIR="/opt/fsl-6.0.5" \ + PATH="/opt/fsl-6.0.5/bin:$PATH" \ + FSLOUTPUTTYPE="NIFTI_GZ" + # Install Neurodebian packages (AFNI, Connectome Workbench, git) RUN curl -sSL "http://neuro.debian.net/lists/$( lsb_release -c | cut -f2 ).us-ca.full" >> /etc/apt/sources.list.d/neurodebian.sources.list && \ apt-key add /usr/local/etc/neurodebian.gpg && \