diff --git a/Dockerfile b/Dockerfile index e2340eb..47f325c 100644 --- a/Dockerfile +++ b/Dockerfile @@ -88,13 +88,6 @@ RUN conda \ python=3.10 \ conda-build \ pip=23 \ - fsl-bet2=2111.0 \ - fsl-flirt=2111.0 \ - fsl-fast4=2111.0 \ - fsl-fugue=2201.2 \ - fsl-mcflirt=2111.0 \ - fsl-miscmaths=2203.2 \ - fsl-topup=2203.1 \ convert3d=1.3.0 \ matplotlib \ mkl=2021.2 \ @@ -182,12 +175,6 @@ RUN npm install -g svgo # Install bids-validator RUN npm install -g bids-validator@1.8.4 -# Install FSL from old ASLPrep version -COPY --from=build_fsl /opt/fsl-6.0.5/ /opt/fsl-6.0.5/ -ENV FSLDIR="/opt/fsl-6.0.5" \ - PATH="/opt/fsl-6.0.5/bin:$PATH" \ - FSLOUTPUTTYPE="NIFTI_GZ" - # Unless otherwise specified each process should only use one thread - nipype # will handle parallelization ENV MKL_NUM_THREADS=1 \