From ae15516cf9575099af7cf424a08866ddd0574a0e Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Fri, 10 Nov 2023 12:57:04 -0500 Subject: [PATCH] Update base.py --- aslprep/workflows/asl/base.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/aslprep/workflows/asl/base.py b/aslprep/workflows/asl/base.py index 4ba028ee1..b3a7a3878 100644 --- a/aslprep/workflows/asl/base.py +++ b/aslprep/workflows/asl/base.py @@ -526,7 +526,7 @@ def init_asl_preproc_wf(asl_file, has_fieldmap=False): sbref_files=sbref_files, name="initial_aslref_wf", ) - initial_aslref_wf.inputs.inputnode.dummy_scans = config.workflow.dummy_vols + initial_aslref_wf.inputs.inputnode.dummy_scans = 0 # fmt:off workflow.connect([ @@ -730,8 +730,10 @@ def init_asl_preproc_wf(asl_file, has_fieldmap=False): name="final_aslref_wf", ) final_aslref_wf.__desc__ = None + final_aslref_wf.inputs.inputnode.dummy_scans = 0 # fmt:off workflow.connect([ + (reduce_asl_file, final_aslref_wf, [("aslcontext", "inputnode.aslcontext")]), (initial_aslref_wf, final_aslref_wf, [("outputnode.skip_vols", "inputnode.dummy_scans")]), (final_aslref_wf, asl_final, [ ("outputnode.ref_image", "aslref"),